IL_4V6X_308
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 4V6X|1|B2|C|1331, 4V6X|1|B2|U|1494, 4V6X|1|B2|G|1497
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_308 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.1642
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V6X|1|B2|U|1329
4V6X|1|B2|G|1330
4V6X|1|B2|C|1331
4V6X|1|B2|A|1332
4V6X|1|B2|U|1333
4V6X|1|B2|G|1334
4V6X|1|B2|G|1335
*
4V6X|1|B2|U|1492
4V6X|1|B2|C|1493
4V6X|1|B2|U|1494
4V6X|1|B2|G|1495
4V6X|1|B2|U|1496
4V6X|1|B2|G|1497
4V6X|1|B2|A|1498
4V6X|1|B2|U|1499
4V6X|1|B2|G|1500
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AD
- 40S ribosomal protein S3
- Chain AK
- 40S ribosomal protein S10
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
- Chain Ah
- Plasminogen activator inhibitor 1 RNA-binding protein
- Chain Az
- Elongation factor 2
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