IL_4V6X_315

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGUC*GUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_315 not in the Motif Atlas

Homologous match to IL_8CRE_034

Geometric discrepancy: 0.1585

The information below is about IL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

4V6X|1|A5|G|1586
4V6X|1|A5|G|1587
4V6X|1|A5|U|1588
4V6X|1|A5|C|1589
*
4V6X|1|A5|G|1605
4V6X|1|A5|U|1606
4V6X|1|A5|C|1607

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain Cj

60S ribosomal protein L37