IL_4V6X_317
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 4V6X|1|A5|U|2661, 4V6X|1|A5|A|2674
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_317 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.1892
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V6X|1|A5|U|2656
4V6X|1|A5|G|2657
4V6X|1|A5|G|2658
4V6X|1|A5|A|2659
4V6X|1|A5|A|2660
4V6X|1|A5|U|2661
4V6X|1|A5|G|2662
*
4V6X|1|A5|C|2672
4V6X|1|A5|G|2673
4V6X|1|A5|A|2674
4V6X|1|A5|G|2675
4V6X|1|A5|A|2676
4V6X|1|A5|G|2677
4V6X|1|A5|A|2678
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain AN
- 40S ribosomal protein S13
- Chain CR
- 60S ribosomal protein L19
- Chain CZ
- 60S ribosomal protein L27
- Chain Cc
- 60S ribosomal protein L30
- Chain Cg
- 60S ribosomal protein L34
- Chain Cp
- 60S ribosomal protein L37a
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