IL_4V6X_321

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

4V6X|1|B2|G|507

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_321 not in the Motif Atlas

Homologous match to IL_8P9A_398

Geometric discrepancy: 0.1393

The information below is about IL_8P9A_398

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

4V6X|1|B2|U|495
4V6X|1|B2|C|496
*
4V6X|1|B2|G|506
4V6X|1|B2|G|507
4V6X|1|B2|A|508

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AY

40S ribosomal protein S24