3D structure

PDB id
4V6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)
Experimental method
ELECTRON MICROSCOPY
Resolution
12 Å

Loop

Sequence
UCCCAAAG*CA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6Y_099 not in the Motif Atlas
Geometric match to IL_7V9E_001
Geometric discrepancy: 0.2381
The information below is about IL_7V9E_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.2
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

4V6Y|1|BA|U|1004
4V6Y|1|BA|C|1005
4V6Y|1|BA|C|1006
4V6Y|1|BA|C|1007
4V6Y|1|BA|A|1008
4V6Y|1|BA|A|1009
4V6Y|1|BA|A|1010
4V6Y|1|BA|G|1011
*
4V6Y|1|BA|C|1150
4V6Y|1|BA|A|1151

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BJ
50S ribosomal protein L9
Chain BQ
50S ribosomal protein L18

Coloring options:


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