IL_4V6Y_114

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Y_114 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.2928

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V6Y|1|BA|C|1357
4V6Y|1|BA|G|1358
4V6Y|1|BA|A|1359
4V6Y|1|BA|G|1360
4V6Y|1|BA|G|1361
*
4V6Y|1|BA|C|1370
4V6Y|1|BA|G|1371
4V6Y|1|BA|U|1372
4V6Y|1|BA|A|1373
4V6Y|1|BA|G|1374

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L32

Chain BC

50S ribosomal protein L35

Chain BX

50S ribosomal protein L25