IL_4V6Y_178

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

4V6Y|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Y_178 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.367

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V6Y|1|AA|U|409
4V6Y|1|AA|G|410
4V6Y|1|AA|A|411
4V6Y|1|AA|A|412
4V6Y|1|AA|G|413
4V6Y|1|AA|A|414
4V6Y|1|AA|A|415
4V6Y|1|AA|G|416
*
4V6Y|1|AA|U|427
4V6Y|1|AA|G|428
4V6Y|1|AA|U|429
4V6Y|1|AA|A|430
4V6Y|1|AA|A|431
4V6Y|1|AA|A|432
4V6Y|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4