IL_4V6Z_135

3D structure

PDB id

4V6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V6Z|1|BA|A|1938, 4V6Z|1|BA|C|1941, 4V6Z|1|BA|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Z_135 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.3697

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4V6Z|1|BA|C|1934
4V6Z|1|BA|G|1935
4V6Z|1|BA|A|1936
4V6Z|1|BA|A|1937
4V6Z|1|BA|A|1938
4V6Z|1|BA|U|1939
4V6Z|1|BA|U|1940
4V6Z|1|BA|C|1941
4V6Z|1|BA|C|1942
4V6Z|1|BA|U|1943
4V6Z|1|BA|U|1944
4V6Z|1|BA|G|1945
*
4V6Z|1|BA|C|1961
4V6Z|1|BA|C|1962
4V6Z|1|BA|U|1963
4V6Z|1|BA|G|1964

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain AA

Small subunit ribosomal RNA; SSU rRNA