4V6Z Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V6Z_001 | No text annotation | ||
| HL_4V6Z_002 | tRNA anticodon loop | ||
| HL_4V6Z_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V6Z_004 | tRNA D-loop | ||
| HL_4V6Z_005 | tRNA anticodon loop | ||
| HL_4V6Z_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V6Z_007 | No text annotation | ||
| HL_4V6Z_008 | Mini UNCG | ||
| HL_4V6Z_009 | GNRA | ||
| HL_4V6Z_010 | GNRA | ||
| HL_4V6Z_011 | No text annotation | ||
| HL_4V6Z_012 | GNRA related | ||
| HL_4V6Z_013 | GNRA | ||
| HL_4V6Z_014 | No text annotation | ||
| HL_4V6Z_015 | UNCG | ||
| HL_4V6Z_016 | No text annotation | ||
| HL_4V6Z_017 | UNCG | ||
| HL_4V6Z_018 | No text annotation | ||
| HL_4V6Z_019 | No text annotation | ||
| HL_4V6Z_112 | GNRA variation | ||
| HL_4V6Z_020 | GNRA-like with tWH | ||
| HL_4V6Z_021 | No text annotation | ||
| HL_4V6Z_022 | GNRA | ||
| HL_4V6Z_023 | No text annotation | ||
| HL_4V6Z_024 | No text annotation | ||
| HL_4V6Z_025 | GNRA | ||
| HL_4V6Z_026 | GNRA | ||
| HL_4V6Z_027 | No text annotation | ||
| HL_4V6Z_028 | GNRA | ||
| HL_4V6Z_029 | No text annotation | ||
| HL_4V6Z_030 | GNRA | ||
| HL_4V6Z_031 | T-loop related | ||
| HL_4V6Z_032 | No text annotation | ||
| HL_4V6Z_033 | UNCG variation | ||
| HL_4V6Z_034 | No text annotation | ||
| HL_4V6Z_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V6Z_036 | No text annotation | ||
| HL_4V6Z_037 | UNCG | ||
| HL_4V6Z_038 | GNRA | ||
| HL_4V6Z_039 | Pseudoknot with intercalation | ||
| HL_4V6Z_040 | No text annotation | ||
| HL_4V6Z_041 | No text annotation | ||
| HL_4V6Z_042 | No text annotation | ||
| HL_4V6Z_043 | No text annotation | ||
| HL_4V6Z_044 | No text annotation | ||
| HL_4V6Z_045 | No text annotation | ||
| HL_4V6Z_046 | No text annotation | ||
| HL_4V6Z_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V6Z_048 | No text annotation | ||
| HL_4V6Z_049 | T-loop with unstacked turn | ||
| HL_4V6Z_050 | No text annotation | ||
| HL_4V6Z_051 | Pseudoknot geometry | ||
| HL_4V6Z_052 | GNRA | ||
| HL_4V6Z_053 | GNRA | ||
| HL_4V6Z_054 | No text annotation | ||
| HL_4V6Z_055 | No text annotation | ||
| HL_4V6Z_056 | No text annotation | ||
| HL_4V6Z_057 | GNRA | ||
| HL_4V6Z_058 | GNRA wlth extra near cWW | ||
| HL_4V6Z_110 | No text annotation | ||
| HL_4V6Z_059 | No text annotation | ||
| HL_4V6Z_060 | No text annotation | ||
| HL_4V6Z_061 | No text annotation | ||
| HL_4V6Z_062 | No text annotation | ||
| HL_4V6Z_063 | No text annotation | ||
| HL_4V6Z_064 | GNRA with extra cWW | ||
| HL_4V6Z_065 | No text annotation | ||
| HL_4V6Z_066 | No text annotation | ||
| HL_4V6Z_067 | GNRA related | ||
| HL_4V6Z_068 | No text annotation | ||
| HL_4V6Z_069 | GNRA | ||
| HL_4V6Z_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V6Z_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6Z_072 | GNRA | ||
| HL_4V6Z_073 | No text annotation | ||
| HL_4V6Z_074 | No text annotation | ||
| HL_4V6Z_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V6Z_076 | Mini UNCG | ||
| HL_4V6Z_077 | Mini UNCG | ||
| HL_4V6Z_078 | No text annotation | ||
| HL_4V6Z_079 | GNRA | ||
| HL_4V6Z_080 | No text annotation | ||
| HL_4V6Z_081 | No text annotation | ||
| HL_4V6Z_082 | No text annotation | ||
| HL_4V6Z_083 | No text annotation | ||
| HL_4V6Z_084 | No text annotation | ||
| HL_4V6Z_085 | GNRA | ||
| HL_4V6Z_086 | No text annotation | ||
| HL_4V6Z_087 | No text annotation | ||
| HL_4V6Z_088 | No text annotation | ||
| HL_4V6Z_089 | No text annotation | ||
| HL_4V6Z_090 | No text annotation | ||
| HL_4V6Z_091 | No text annotation | ||
| HL_4V6Z_092 | No text annotation | ||
| HL_4V6Z_093 | No text annotation | ||
| HL_4V6Z_094 | Pseudoknot geometry | ||
| HL_4V6Z_095 | GNRA | ||
| HL_4V6Z_096 | GNRA | ||
| HL_4V6Z_097 | No text annotation | ||
| HL_4V6Z_098 | No text annotation | ||
| HL_4V6Z_099 | GNRA variation | ||
| HL_4V6Z_100 | No text annotation | ||
| HL_4V6Z_101 | GNRA | ||
| HL_4V6Z_102 | GNRA | ||
| HL_4V6Z_103 | Ribsomal LSU H95 | ||
| HL_4V6Z_104 | No text annotation | ||
| HL_4V6Z_105 | UNCG variation | ||
| HL_4V6Z_113 | No text annotation | ||
| HL_4V6Z_106 | No text annotation | ||
| HL_4V6Z_107 | GNRA | ||
| HL_4V6Z_111 | No text annotation | ||
| HL_4V6Z_108 | No text annotation | ||
| HL_4V6Z_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V6Z_001 | No text annotation | ||
| IL_4V6Z_002 | Single bulged A | ||
| IL_4V6Z_003 | No text annotation | ||
| IL_4V6Z_004 | Single stack bend | ||
| IL_4V6Z_005 | Multiple bulged bases | ||
| IL_4V6Z_006 | Minor groove platform with extra cWW | ||
| IL_4V6Z_007 | Minor groove platform | ||
| IL_4V6Z_008 | Major groove intercalation | ||
| IL_4V6Z_009 | Isolated non-canonical cWW pair | ||
| IL_4V6Z_010 | Minor groove platform related | ||
| IL_4V6Z_011 | Isolated cWH basepair | ||
| IL_4V6Z_012 | tWH-tWH-tHW-tHW | ||
| IL_4V6Z_013 | No text annotation | ||
| IL_4V6Z_014 | Kink-turn with non-sequential stacking | ||
| IL_4V6Z_187 | No text annotation | ||
| IL_4V6Z_015 | No text annotation | ||
| IL_4V6Z_016 | No text annotation | ||
| IL_4V6Z_188 | No text annotation | ||
| IL_4V6Z_017 | Single bulged U | ||
| IL_4V6Z_018 | C-loop | ||
| IL_4V6Z_019 | Single bulged G | ||
| IL_4V6Z_020 | No text annotation | ||
| IL_4V6Z_021 | No text annotation | ||
| IL_4V6Z_022 | tSH-tHW-tWW | ||
| IL_4V6Z_023 | No text annotation | ||
| IL_4V6Z_024 | SSU/LSU pseudoknot | ||
| IL_4V6Z_025 | Kink-turn related | ||
| IL_4V6Z_026 | No text annotation | ||
| IL_4V6Z_027 | tSH-tHW-tHS | ||
| IL_4V6Z_174 | Isolated non-canonical cWW pair | ||
| IL_4V6Z_028 | Major groove platform | ||
| IL_4V6Z_029 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6Z_189 | No text annotation | ||
| IL_4V6Z_030 | No text annotation | ||
| IL_4V6Z_031 | Major groove platform; stack outside cWW | ||
| IL_4V6Z_032 | No text annotation | ||
| IL_4V6Z_033 | No text annotation | ||
| IL_4V6Z_190 | Tandem non-canonical cWW pairs | ||
| IL_4V6Z_034 | Triple non-canonical cWW pairs | ||
| IL_4V6Z_035 | Kink-turn | ||
| IL_4V6Z_036 | Left turn | ||
| IL_4V6Z_037 | tSH-tHW-tHS | ||
| IL_4V6Z_175 | Isolated non-canonical cWW pair | ||
| IL_4V6Z_038 | Isolated cWS basepair | ||
| IL_4V6Z_039 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V6Z_040 | Single bulged A | ||
| IL_4V6Z_041 | Other IL | ||
| IL_4V6Z_042 | Minor groove platform | ||
| IL_4V6Z_043 | No text annotation | ||
| IL_4V6Z_191 | No text annotation | ||
| IL_4V6Z_044 | No text annotation | ||
| IL_4V6Z_192 | Single stack bend | ||
| IL_4V6Z_045 | Single bulged U | ||
| IL_4V6Z_046 | No text annotation | ||
| IL_4V6Z_047 | Minor groove platform | ||
| IL_4V6Z_048 | No text annotation | ||
| IL_4V6Z_049 | No text annotation | ||
| IL_4V6Z_050 | No text annotation | ||
| IL_4V6Z_051 | Minor groove platform | ||
| IL_4V6Z_052 | No text annotation | ||
| IL_4V6Z_053 | No text annotation | ||
| IL_4V6Z_054 | 180 degree turn | ||
| IL_4V6Z_055 | Double sheared with non-canonical cWW | ||
| IL_4V6Z_056 | No text annotation | ||
| IL_4V6Z_057 | No text annotation | ||
| IL_4V6Z_058 | Isolated non-canonical cWW pair | ||
| IL_4V6Z_059 | No text annotation | ||
| IL_4V6Z_176 | Isolated non-canonical cWW pair | ||
| IL_4V6Z_060 | Tandem non-canonical cWW pairs | ||
| IL_4V6Z_177 | Double sheared | ||
| IL_4V6Z_061 | No text annotation | ||
| IL_4V6Z_062 | No text annotation | ||
| IL_4V6Z_063 | No text annotation | ||
| IL_4V6Z_064 | No text annotation | ||
| IL_4V6Z_178 | No text annotation | ||
| IL_4V6Z_193 | No text annotation | ||
| IL_4V6Z_065 | Single bulged A | ||
| IL_4V6Z_066 | Minor groove platform | ||
| IL_4V6Z_067 | No text annotation | ||
| IL_4V6Z_068 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6Z_069 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V6Z_070 | No text annotation | ||
| IL_4V6Z_071 | No text annotation | ||
| IL_4V6Z_072 | No text annotation | ||
| IL_4V6Z_073 | No text annotation | ||
| IL_4V6Z_074 | Double sheared | ||
| IL_4V6Z_075 | Isolated non-canonical cWW pair | ||
| IL_4V6Z_076 | AAA cross-strand stack | ||
| IL_4V6Z_077 | Isolated non-canonical cWW pair | ||
| IL_4V6Z_078 | tHW-tHW cross-strand stack | ||
| IL_4V6Z_079 | Single bulged A | ||
| IL_4V6Z_080 | Single bulged G | ||
| IL_4V6Z_081 | Triple sheared | ||
| IL_4V6Z_082 | No text annotation | ||
| IL_4V6Z_194 | Major groove platform | ||
| IL_4V6Z_083 | Multiple bulged bases | ||
| IL_4V6Z_084 | No text annotation | ||
| IL_4V6Z_179 | No text annotation | ||
| IL_4V6Z_085 | No text annotation | ||
| IL_4V6Z_195 | Single stack bend | ||
| IL_4V6Z_086 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V6Z_087 | Single bulged G | ||
| IL_4V6Z_088 | C-loop with bulged stacked A's | ||
| IL_4V6Z_089 | Isolated cWS basepair | ||
| IL_4V6Z_090 | Double sheared with non-canonical cWW | ||
| IL_4V6Z_180 | No text annotation | ||
| IL_4V6Z_091 | Isolated non-canonical cWW with bulges | ||
| IL_4V6Z_092 | Single bulged C | ||
| IL_4V6Z_093 | UAA/GAN | ||
| IL_4V6Z_094 | SSU/LSU pseudoknot | ||
| IL_4V6Z_095 | Single bulged U | ||
| IL_4V6Z_096 | Kink-turn related | ||
| IL_4V6Z_097 | No text annotation | ||
| IL_4V6Z_098 | Isolated non-canonical cWW pair | ||
| IL_4V6Z_099 | Tandem non-canonical cWW pairs | ||
| IL_4V6Z_100 | Kink-turn | ||
| IL_4V6Z_101 | No text annotation | ||
| IL_4V6Z_102 | No text annotation | ||
| IL_4V6Z_181 | No text annotation | ||
| IL_4V6Z_103 | Isolated cWS basepair | ||
| IL_4V6Z_104 | No text annotation | ||
| IL_4V6Z_105 | Kink-turn | ||
| IL_4V6Z_106 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V6Z_107 | No text annotation | ||
| IL_4V6Z_182 | Major groove platform; stack outside cWW | ||
| IL_4V6Z_108 | Major groove minor groove platform with tHH | ||
| IL_4V6Z_109 | UAA/GAN | ||
| IL_4V6Z_110 | tSH-tHW-tHS | ||
| IL_4V6Z_111 | No text annotation | ||
| IL_4V6Z_112 | UAA/GAN | ||
| IL_4V6Z_113 | Tandem non-canonical cWW pairs | ||
| IL_4V6Z_114 | tSH-tHW | ||
| IL_4V6Z_115 | No text annotation | ||
| IL_4V6Z_116 | tSH-tHW-tHS | ||
| IL_4V6Z_117 | No text annotation | ||
| IL_4V6Z_118 | Decoding loop related | ||
| IL_4V6Z_119 | UAA/GAN variation | ||
| IL_4V6Z_120 | No text annotation | ||
| IL_4V6Z_121 | Isolated tWW turn | ||
| IL_4V6Z_122 | Major groove platform; stack outside cWW | ||
| IL_4V6Z_183 | No text annotation | ||
| IL_4V6Z_123 | Intercalated tWH | ||
| IL_4V6Z_124 | tSH-tSH-tHH-tHS | ||
| IL_4V6Z_125 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V6Z_126 | Triple sheared | ||
| IL_4V6Z_127 | Single bulged C | ||
| IL_4V6Z_128 | Single bulged A | ||
| IL_4V6Z_129 | Kink-turn related | ||
| IL_4V6Z_130 | Minor groove platform, major groove intercalation | ||
| IL_4V6Z_131 | Major groove intercalation | ||
| IL_4V6Z_132 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6Z_184 | No text annotation | ||
| IL_4V6Z_133 | UAA/GAN related | ||
| IL_4V6Z_134 | Bulged stacked bases | ||
| IL_4V6Z_135 | No text annotation | ||
| IL_4V6Z_136 | Major groove platform | ||
| IL_4V6Z_137 | No text annotation | ||
| IL_4V6Z_138 | Single bulged U | ||
| IL_4V6Z_139 | Minor groove platform | ||
| IL_4V6Z_140 | Isolated tHS basepair with bulges | ||
| IL_4V6Z_141 | Isolated non-canonical cWW pair | ||
| IL_4V6Z_185 | No text annotation | ||
| IL_4V6Z_142 | No text annotation | ||
| IL_4V6Z_143 | No text annotation | ||
| IL_4V6Z_144 | Multiple bulged bases | ||
| IL_4V6Z_145 | No text annotation | ||
| IL_4V6Z_146 | No text annotation | ||
| IL_4V6Z_147 | Single bulged U | ||
| IL_4V6Z_148 | Double sheared | ||
| IL_4V6Z_149 | No text annotation | ||
| IL_4V6Z_150 | Major groove platform | ||
| IL_4V6Z_151 | Major groove platform | ||
| IL_4V6Z_152 | Major groove minor groove platform with extra cWW | ||
| IL_4V6Z_153 | Double sheared with non-canonical cWW | ||
| IL_4V6Z_154 | Major groove platform | ||
| IL_4V6Z_155 | Double sheared | ||
| IL_4V6Z_156 | No text annotation | ||
| IL_4V6Z_157 | Major groove platform with intercalation | ||
| IL_4V6Z_158 | Single bulged A | ||
| IL_4V6Z_159 | tSH-tHS-tHW | ||
| IL_4V6Z_160 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V6Z_161 | C-loop | ||
| IL_4V6Z_162 | No text annotation | ||
| IL_4V6Z_163 | Multiple bulged bases | ||
| IL_4V6Z_164 | UAA/GAN with extra cWW | ||
| IL_4V6Z_165 | No text annotation | ||
| IL_4V6Z_166 | Major groove intercalation | ||
| IL_4V6Z_167 | No text annotation | ||
| IL_4V6Z_186 | No text annotation | ||
| IL_4V6Z_168 | No text annotation | ||
| IL_4V6Z_169 | Major groove intercalation | ||
| IL_4V6Z_170 | No text annotation | ||
| IL_4V6Z_171 | Major groove minor groove platform; mini C-loop | ||
| IL_4V6Z_172 | Symmetric double minor groove platform | ||
| IL_4V6Z_173 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V6Z_001 | No text annotation | ||
| J3_4V6Z_024 | No text annotation | ||
| J3_4V6Z_002 | No text annotation | ||
| J3_4V6Z_025 | No text annotation | ||
| J3_4V6Z_003 | No text annotation | ||
| J3_4V6Z_026 | No text annotation | ||
| J3_4V6Z_004 | No text annotation | ||
| J3_4V6Z_027 | No text annotation | ||
| J3_4V6Z_005 | No text annotation | ||
| J3_4V6Z_006 | No text annotation | ||
| J3_4V6Z_007 | No text annotation | ||
| J3_4V6Z_040 | No text annotation | ||
| J3_4V6Z_028 | No text annotation | ||
| J3_4V6Z_008 | No text annotation | ||
| J3_4V6Z_009 | No text annotation | ||
| J3_4V6Z_029 | No text annotation | ||
| J3_4V6Z_010 | No text annotation | ||
| J3_4V6Z_011 | No text annotation | ||
| J3_4V6Z_030 | No text annotation | ||
| J3_4V6Z_031 | No text annotation | ||
| J3_4V6Z_032 | No text annotation | ||
| J3_4V6Z_033 | No text annotation | ||
| J3_4V6Z_034 | No text annotation | ||
| J3_4V6Z_041 | No text annotation | ||
| J3_4V6Z_012 | No text annotation | ||
| J3_4V6Z_035 | No text annotation | ||
| J3_4V6Z_013 | No text annotation | ||
| J3_4V6Z_014 | No text annotation | ||
| J3_4V6Z_015 | No text annotation | ||
| J3_4V6Z_016 | No text annotation | ||
| J3_4V6Z_017 | No text annotation | ||
| J3_4V6Z_036 | No text annotation | ||
| J3_4V6Z_037 | No text annotation | ||
| J3_4V6Z_038 | No text annotation | ||
| J3_4V6Z_018 | Kink-turn 3-way junction | ||
| J3_4V6Z_039 | No text annotation | ||
| J3_4V6Z_019 | No text annotation | ||
| J3_4V6Z_020 | No text annotation | ||
| J3_4V6Z_021 | No text annotation | ||
| J3_4V6Z_022 | No text annotation | ||
| J3_4V6Z_023 | No text annotation | ||
| J4_4V6Z_001 | tRNA junction | ||
| J4_4V6Z_016 | tRNA junction | ||
| J4_4V6Z_002 | No text annotation | ||
| J4_4V6Z_003 | No text annotation | ||
| J4_4V6Z_004 | No text annotation | ||
| J4_4V6Z_005 | No text annotation | ||
| J4_4V6Z_006 | No text annotation | ||
| J4_4V6Z_007 | No text annotation | ||
| J4_4V6Z_008 | No text annotation | ||
| J4_4V6Z_009 | No text annotation | ||
| J4_4V6Z_010 | No text annotation | ||
| J4_4V6Z_017 | No text annotation | ||
| J4_4V6Z_011 | No text annotation | ||
| J4_4V6Z_012 | No text annotation | ||
| J4_4V6Z_018 | No text annotation | ||
| J4_4V6Z_013 | No text annotation | ||
| J4_4V6Z_014 | No text annotation | ||
| J4_4V6Z_015 | No text annotation | ||
| J5_4V6Z_001 | No text annotation | ||
| J5_4V6Z_002 | No text annotation | ||
| J5_4V6Z_003 | No text annotation | ||
| J5_4V6Z_004 | No text annotation | ||
| J5_4V6Z_005 | No text annotation | ||
| J5_4V6Z_006 | No text annotation | ||
| J5_4V6Z_007 | No text annotation | ||
| J5_4V6Z_010 | No text annotation | ||
| J5_4V6Z_008 | No text annotation | ||
| J5_4V6Z_011 | No text annotation | ||
| J5_4V6Z_009 | No text annotation | ||
| J6_4V6Z_001 | No text annotation | ||
| J6_4V6Z_003 | No text annotation | ||
| J6_4V6Z_002 | No text annotation | ||
| J7_4V6Z_001 | No text annotation | ||
| J7_4V6Z_002 | No text annotation |
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