IL_4V70_043

3D structure

PDB id

4V70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GGU*ACAC

Length

7 nucleotides

Bulged bases

4V70|1|AA|A|1227

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V70_043 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.3585

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V70|1|AA|G|953
4V70|1|AA|G|954
4V70|1|AA|U|955
*
4V70|1|AA|A|1225
4V70|1|AA|C|1226
4V70|1|AA|A|1227
4V70|1|AA|C|1228

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain AM

30S ribosomal protein S13

Chain AS

30S ribosomal protein S19