IL_4V70_114

3D structure

PDB id

4V70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GUGUAG*UGAGGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V70_114 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3945

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

4V70|1|BA|G|1473
4V70|1|BA|U|1474
4V70|1|BA|G|1475
4V70|1|BA|U|1476
4V70|1|BA|A|1477
4V70|1|BA|G|1478
*
4V70|1|BA|U|1513
4V70|1|BA|G|1514
4V70|1|BA|A|1515
4V70|1|BA|G|1516
4V70|1|BA|G|1517
4V70|1|BA|C|1518

Current chains

Chain BA

23S ribosomal RNA

Nearby chains