IL_4V71_104

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V71|1|BA|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V71_104 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.3587

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V71|1|BA|C|1043
4V71|1|BA|C|1044
4V71|1|BA|C|1045
4V71|1|BA|A|1046
4V71|1|BA|G|1047
4V71|1|BA|A|1048
4V71|1|BA|C|1049
4V71|1|BA|A|1050
4V71|1|BA|G|1051
*
4V71|1|BA|U|1108
4V71|1|BA|C|1109
4V71|1|BA|G|1110
4V71|1|BA|A|1111
4V71|1|BA|G|1112

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6