4V71 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V71_001 | No text annotation | ||
| HL_4V71_002 | tRNA anticodon loop | ||
| HL_4V71_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V71_004 | tRNA D-loop | ||
| HL_4V71_005 | tRNA anticodon loop | ||
| HL_4V71_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V71_007 | No text annotation | ||
| HL_4V71_008 | No text annotation | ||
| HL_4V71_009 | GNRA | ||
| HL_4V71_010 | GNRA | ||
| HL_4V71_011 | UNCG | ||
| HL_4V71_012 | GNRA related | ||
| HL_4V71_013 | GNRA | ||
| HL_4V71_014 | No text annotation | ||
| HL_4V71_015 | UNCG | ||
| HL_4V71_016 | GNRA | ||
| HL_4V71_017 | UNCG | ||
| HL_4V71_018 | No text annotation | ||
| HL_4V71_019 | No text annotation | ||
| HL_4V71_020 | GNRA-like with tWH | ||
| HL_4V71_021 | No text annotation | ||
| HL_4V71_022 | GNRA | ||
| HL_4V71_023 | No text annotation | ||
| HL_4V71_024 | No text annotation | ||
| HL_4V71_025 | GNRA | ||
| HL_4V71_026 | GNRA | ||
| HL_4V71_027 | No text annotation | ||
| HL_4V71_028 | GNRA | ||
| HL_4V71_029 | UNCG variation | ||
| HL_4V71_030 | GNRA | ||
| HL_4V71_031 | T-loop related | ||
| HL_4V71_110 | No text annotation | ||
| HL_4V71_111 | No text annotation | ||
| HL_4V71_032 | No text annotation | ||
| HL_4V71_033 | GNRA | ||
| HL_4V71_034 | No text annotation | ||
| HL_4V71_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V71_036 | No text annotation | ||
| HL_4V71_037 | UNCG | ||
| HL_4V71_038 | GNRA | ||
| HL_4V71_039 | No text annotation | ||
| HL_4V71_040 | No text annotation | ||
| HL_4V71_041 | No text annotation | ||
| HL_4V71_042 | No text annotation | ||
| HL_4V71_043 | No text annotation | ||
| HL_4V71_044 | No text annotation | ||
| HL_4V71_045 | No text annotation | ||
| HL_4V71_046 | No text annotation | ||
| HL_4V71_047 | No text annotation | ||
| HL_4V71_048 | No text annotation | ||
| HL_4V71_049 | T-loop with unstacked turn | ||
| HL_4V71_050 | No text annotation | ||
| HL_4V71_115 | No text annotation | ||
| HL_4V71_051 | Pseudoknot geometry | ||
| HL_4V71_052 | GNRA | ||
| HL_4V71_053 | GNRA | ||
| HL_4V71_054 | No text annotation | ||
| HL_4V71_055 | No text annotation | ||
| HL_4V71_056 | No text annotation | ||
| HL_4V71_057 | GNRA | ||
| HL_4V71_058 | Anticodon loop related | ||
| HL_4V71_112 | No text annotation | ||
| HL_4V71_059 | No text annotation | ||
| HL_4V71_060 | No text annotation | ||
| HL_4V71_061 | No text annotation | ||
| HL_4V71_062 | No text annotation | ||
| HL_4V71_063 | No text annotation | ||
| HL_4V71_064 | No text annotation | ||
| HL_4V71_065 | No text annotation | ||
| HL_4V71_066 | No text annotation | ||
| HL_4V71_067 | No text annotation | ||
| HL_4V71_068 | No text annotation | ||
| HL_4V71_069 | GNRA | ||
| HL_4V71_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V71_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V71_072 | GNRA | ||
| HL_4V71_073 | No text annotation | ||
| HL_4V71_074 | No text annotation | ||
| HL_4V71_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V71_076 | No text annotation | ||
| HL_4V71_116 | No text annotation | ||
| HL_4V71_077 | Mini UNCG | ||
| HL_4V71_078 | No text annotation | ||
| HL_4V71_079 | GNRA | ||
| HL_4V71_080 | No text annotation | ||
| HL_4V71_081 | No text annotation | ||
| HL_4V71_082 | No text annotation | ||
| HL_4V71_083 | No text annotation | ||
| HL_4V71_084 | No text annotation | ||
| HL_4V71_085 | No text annotation | ||
| HL_4V71_086 | No text annotation | ||
| HL_4V71_087 | No text annotation | ||
| HL_4V71_088 | No text annotation | ||
| HL_4V71_089 | UNCG | ||
| HL_4V71_090 | No text annotation | ||
| HL_4V71_091 | No text annotation | ||
| HL_4V71_092 | No text annotation | ||
| HL_4V71_093 | No text annotation | ||
| HL_4V71_094 | No text annotation | ||
| HL_4V71_113 | Pseudoknot geometry | ||
| HL_4V71_095 | GNRA | ||
| HL_4V71_096 | GNRA | ||
| HL_4V71_097 | No text annotation | ||
| HL_4V71_098 | No text annotation | ||
| HL_4V71_099 | No text annotation | ||
| HL_4V71_100 | No text annotation | ||
| HL_4V71_101 | GNRA | ||
| HL_4V71_102 | GNRA | ||
| HL_4V71_103 | Ribsomal LSU H95 | ||
| HL_4V71_104 | No text annotation | ||
| HL_4V71_105 | No text annotation | ||
| HL_4V71_106 | No text annotation | ||
| HL_4V71_107 | GNRA | ||
| HL_4V71_114 | No text annotation | ||
| HL_4V71_108 | No text annotation | ||
| HL_4V71_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V71_001 | Single bulged G | ||
| IL_4V71_002 | Single bulged A | ||
| IL_4V71_003 | No text annotation | ||
| IL_4V71_004 | Single stack bend | ||
| IL_4V71_005 | Multiple bulged bases | ||
| IL_4V71_006 | Minor groove platform with extra cWW | ||
| IL_4V71_007 | Minor groove platform | ||
| IL_4V71_008 | No text annotation | ||
| IL_4V71_009 | Isolated non-canonical cWW pair | ||
| IL_4V71_010 | No text annotation | ||
| IL_4V71_011 | Isolated cWH basepair | ||
| IL_4V71_012 | tWH-tWH-tHW-tHW | ||
| IL_4V71_013 | No text annotation | ||
| IL_4V71_014 | No text annotation | ||
| IL_4V71_190 | No text annotation | ||
| IL_4V71_015 | No text annotation | ||
| IL_4V71_016 | No text annotation | ||
| IL_4V71_017 | Single bulged U | ||
| IL_4V71_191 | C-loop | ||
| IL_4V71_018 | C-loop with extra cWW pair | ||
| IL_4V71_192 | Single bulged G | ||
| IL_4V71_019 | No text annotation | ||
| IL_4V71_020 | No text annotation | ||
| IL_4V71_021 | tSH-tHW-tWW | ||
| IL_4V71_022 | No text annotation | ||
| IL_4V71_023 | Minor groove platform | ||
| IL_4V71_024 | Single bulged A | ||
| IL_4V71_025 | SSU/LSU pseudoknot | ||
| IL_4V71_026 | Kink-turn related | ||
| IL_4V71_027 | No text annotation | ||
| IL_4V71_028 | tSH-tHW-tHS | ||
| IL_4V71_029 | Major groove platform | ||
| IL_4V71_030 | Major groove minor groove platform; mini C-loop | ||
| IL_4V71_031 | No text annotation | ||
| IL_4V71_032 | Major groove platform; stack outside cWW | ||
| IL_4V71_033 | No text annotation | ||
| IL_4V71_193 | Single stack bend | ||
| IL_4V71_034 | Tandem non-canonical cWW pairs | ||
| IL_4V71_194 | No text annotation | ||
| IL_4V71_035 | No text annotation | ||
| IL_4V71_036 | No text annotation | ||
| IL_4V71_037 | Left turn | ||
| IL_4V71_038 | tSH-tHW-tHS | ||
| IL_4V71_179 | Isolated non-canonical cWW pair | ||
| IL_4V71_039 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V71_040 | Single bulged A | ||
| IL_4V71_041 | Single bulged G | ||
| IL_4V71_042 | Minor groove platform | ||
| IL_4V71_043 | No text annotation | ||
| IL_4V71_044 | Minor groove platform | ||
| IL_4V71_045 | Single stack bend | ||
| IL_4V71_046 | Single bulged U | ||
| IL_4V71_047 | Tandem non-canonical cWW pairs | ||
| IL_4V71_195 | Isolated cWS basepair | ||
| IL_4V71_048 | Minor groove platform | ||
| IL_4V71_049 | Single bulged U | ||
| IL_4V71_050 | Isolated non-canonical cWW pair | ||
| IL_4V71_051 | No text annotation | ||
| IL_4V71_052 | Minor groove platform | ||
| IL_4V71_180 | No text annotation | ||
| IL_4V71_053 | No text annotation | ||
| IL_4V71_054 | No text annotation | ||
| IL_4V71_055 | 180 degree turn | ||
| IL_4V71_056 | Double sheared with non-canonical cWW | ||
| IL_4V71_057 | No text annotation | ||
| IL_4V71_058 | No text annotation | ||
| IL_4V71_059 | No text annotation | ||
| IL_4V71_060 | Isolated non-canonical cWW pair | ||
| IL_4V71_061 | Isolated non-canonical cWW pair | ||
| IL_4V71_181 | Isolated non-canonical cWW pair | ||
| IL_4V71_062 | Tandem non-canonical cWW pairs | ||
| IL_4V71_063 | Double sheared | ||
| IL_4V71_064 | No text annotation | ||
| IL_4V71_065 | Isolated non-canonical cWW pair | ||
| IL_4V71_066 | No text annotation | ||
| IL_4V71_067 | No text annotation | ||
| IL_4V71_068 | Single bulged A | ||
| IL_4V71_069 | Minor groove platform | ||
| IL_4V71_070 | No text annotation | ||
| IL_4V71_071 | Single stack bend | ||
| IL_4V71_182 | 9x8 Sarcin-Ricin; G-bulge | ||
| IL_4V71_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V71_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V71_074 | No text annotation | ||
| IL_4V71_075 | No text annotation | ||
| IL_4V71_183 | No text annotation | ||
| IL_4V71_076 | No text annotation | ||
| IL_4V71_077 | No text annotation | ||
| IL_4V71_078 | Double sheared | ||
| IL_4V71_079 | Isolated non-canonical cWW pair | ||
| IL_4V71_080 | AAA cross-strand stack | ||
| IL_4V71_081 | Isolated non-canonical cWW pair | ||
| IL_4V71_082 | tHW-tHW cross-strand stack | ||
| IL_4V71_083 | Single bulged A | ||
| IL_4V71_084 | Single bulged G | ||
| IL_4V71_085 | Triple sheared | ||
| IL_4V71_086 | Major groove platform | ||
| IL_4V71_087 | Multiple bulged bases | ||
| IL_4V71_088 | No text annotation | ||
| IL_4V71_089 | No text annotation | ||
| IL_4V71_196 | Single stack bend | ||
| IL_4V71_090 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V71_091 | Single bulged G | ||
| IL_4V71_092 | C-loop | ||
| IL_4V71_093 | Isolated cWS basepair | ||
| IL_4V71_094 | Double sheared with non-canonical cWW | ||
| IL_4V71_095 | Single bulged A | ||
| IL_4V71_096 | Single bulged C | ||
| IL_4V71_097 | UAA/GAN | ||
| IL_4V71_098 | SSU/LSU pseudoknot | ||
| IL_4V71_099 | Single bulged U | ||
| IL_4V71_100 | Kink-turn related | ||
| IL_4V71_101 | No text annotation | ||
| IL_4V71_102 | Isolated non-canonical cWW pair | ||
| IL_4V71_103 | Tandem non-canonical cWW pairs | ||
| IL_4V71_104 | Kink-turn | ||
| IL_4V71_105 | No text annotation | ||
| IL_4V71_106 | No text annotation | ||
| IL_4V71_184 | No text annotation | ||
| IL_4V71_197 | Isolated cWS basepair | ||
| IL_4V71_107 | Tandem non-canonical cWW pairs | ||
| IL_4V71_108 | No text annotation | ||
| IL_4V71_109 | Kink-turn | ||
| IL_4V71_110 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V71_111 | Major groove platform; stack outside cWW | ||
| IL_4V71_112 | Major groove minor groove platform with tHH | ||
| IL_4V71_113 | UAA/GAN | ||
| IL_4V71_114 | tSH-tHW-tHS | ||
| IL_4V71_115 | No text annotation | ||
| IL_4V71_185 | No text annotation | ||
| IL_4V71_116 | UAA/GAN | ||
| IL_4V71_117 | Tandem non-canonical cWW pairs | ||
| IL_4V71_118 | tSH-tHW | ||
| IL_4V71_119 | No text annotation | ||
| IL_4V71_120 | tSH-tHW-tHS | ||
| IL_4V71_121 | No text annotation | ||
| IL_4V71_122 | Isolated non-canonical cWW pair | ||
| IL_4V71_123 | UAA/GAN variation | ||
| IL_4V71_124 | No text annotation | ||
| IL_4V71_125 | Isolated tWW turn | ||
| IL_4V71_126 | Major groove platform; stack outside cWW | ||
| IL_4V71_186 | No text annotation | ||
| IL_4V71_127 | Intercalated tWH | ||
| IL_4V71_128 | tSH-tSH-tHH-tHS | ||
| IL_4V71_187 | No text annotation | ||
| IL_4V71_129 | No text annotation | ||
| IL_4V71_130 | Triple sheared with non-canonical cWW | ||
| IL_4V71_131 | Single bulged A | ||
| IL_4V71_132 | Kink-turn related | ||
| IL_4V71_133 | Minor groove platform, major groove intercalation | ||
| IL_4V71_134 | Major groove intercalation | ||
| IL_4V71_135 | Major groove minor groove platform; mini C-loop | ||
| IL_4V71_188 | No text annotation | ||
| IL_4V71_136 | UAA/GAN related | ||
| IL_4V71_137 | Multiple bulged bases | ||
| IL_4V71_138 | No text annotation | ||
| IL_4V71_139 | Major groove platform | ||
| IL_4V71_140 | Major groove platform with intercalation | ||
| IL_4V71_141 | Single bulged U | ||
| IL_4V71_142 | Minor groove platform | ||
| IL_4V71_143 | Isolated tHS basepair with bulges | ||
| IL_4V71_144 | Isolated non-canonical cWW pair | ||
| IL_4V71_145 | No text annotation | ||
| IL_4V71_146 | Isolated non-canonical cWW pair | ||
| IL_4V71_147 | Multiple bulged bases | ||
| IL_4V71_148 | No text annotation | ||
| IL_4V71_149 | No text annotation | ||
| IL_4V71_189 | No text annotation | ||
| IL_4V71_198 | No text annotation | ||
| IL_4V71_150 | Single bulged U | ||
| IL_4V71_151 | Double sheared | ||
| IL_4V71_152 | Single bulged U | ||
| IL_4V71_153 | Single stack bend | ||
| IL_4V71_154 | Major groove platform | ||
| IL_4V71_155 | Major groove platform | ||
| IL_4V71_156 | Major groove minor groove platform with extra cWW | ||
| IL_4V71_157 | Double sheared with non-canonical cWW | ||
| IL_4V71_158 | No text annotation | ||
| IL_4V71_159 | Isolated non-canonical cWW with bulges | ||
| IL_4V71_160 | No text annotation | ||
| IL_4V71_161 | Major groove platform with intercalation | ||
| IL_4V71_162 | Single bulged A | ||
| IL_4V71_163 | tSH-tHS-tHW | ||
| IL_4V71_164 | No text annotation | ||
| IL_4V71_165 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_4V71_166 | C-loop | ||
| IL_4V71_167 | UAA/GAN related, with intercalation | ||
| IL_4V71_168 | Multiple bulged bases | ||
| IL_4V71_169 | UAA/GAN with extra cWW | ||
| IL_4V71_170 | No text annotation | ||
| IL_4V71_171 | Major groove intercalation | ||
| IL_4V71_172 | No text annotation | ||
| IL_4V71_173 | No text annotation | ||
| IL_4V71_174 | Major groove intercalation | ||
| IL_4V71_175 | No text annotation | ||
| IL_4V71_176 | Major groove minor groove platform; mini C-loop | ||
| IL_4V71_177 | Symmetric double minor groove platform | ||
| IL_4V71_178 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V71_001 | No text annotation | ||
| J3_4V71_027 | No text annotation | ||
| J3_4V71_002 | No text annotation | ||
| J3_4V71_028 | No text annotation | ||
| J3_4V71_038 | No text annotation | ||
| J3_4V71_003 | No text annotation | ||
| J3_4V71_029 | No text annotation | ||
| J3_4V71_004 | No text annotation | ||
| J3_4V71_030 | No text annotation | ||
| J3_4V71_005 | No text annotation | ||
| J3_4V71_006 | No text annotation | ||
| J3_4V71_007 | No text annotation | ||
| J3_4V71_031 | No text annotation | ||
| J3_4V71_008 | No text annotation | ||
| J3_4V71_039 | No text annotation | ||
| J3_4V71_009 | No text annotation | ||
| J3_4V71_010 | No text annotation | ||
| J3_4V71_011 | No text annotation | ||
| J3_4V71_032 | No text annotation | ||
| J3_4V71_012 | No text annotation | ||
| J3_4V71_013 | No text annotation | ||
| J3_4V71_033 | No text annotation | ||
| J3_4V71_034 | No text annotation | ||
| J3_4V71_014 | No text annotation | ||
| J3_4V71_035 | No text annotation | ||
| J3_4V71_015 | No text annotation | ||
| J3_4V71_016 | No text annotation | ||
| J3_4V71_017 | No text annotation | ||
| J3_4V71_018 | No text annotation | ||
| J3_4V71_019 | No text annotation | ||
| J3_4V71_020 | No text annotation | ||
| J3_4V71_036 | No text annotation | ||
| J3_4V71_021 | No text annotation | ||
| J3_4V71_037 | No text annotation | ||
| J3_4V71_022 | No text annotation | ||
| J3_4V71_023 | No text annotation | ||
| J3_4V71_024 | No text annotation | ||
| J3_4V71_025 | No text annotation | ||
| J3_4V71_026 | No text annotation | ||
| J4_4V71_001 | tRNA junction | ||
| J4_4V71_017 | tRNA junction | ||
| J4_4V71_002 | No text annotation | ||
| J4_4V71_003 | No text annotation | ||
| J4_4V71_004 | No text annotation | ||
| J4_4V71_005 | No text annotation | ||
| J4_4V71_006 | No text annotation | ||
| J4_4V71_007 | No text annotation | ||
| J4_4V71_008 | No text annotation | ||
| J4_4V71_009 | No text annotation | ||
| J4_4V71_010 | No text annotation | ||
| J4_4V71_011 | No text annotation | ||
| J4_4V71_012 | No text annotation | ||
| J4_4V71_013 | No text annotation | ||
| J4_4V71_014 | No text annotation | ||
| J4_4V71_015 | No text annotation | ||
| J4_4V71_016 | No text annotation | ||
| J5_4V71_001 | No text annotation | ||
| J5_4V71_002 | No text annotation | ||
| J5_4V71_003 | No text annotation | ||
| J5_4V71_004 | No text annotation | ||
| J5_4V71_005 | No text annotation | ||
| J5_4V71_006 | No text annotation | ||
| J5_4V71_007 | No text annotation | ||
| J5_4V71_008 | No text annotation | ||
| J5_4V71_009 | No text annotation | ||
| J5_4V71_010 | No text annotation | ||
| J6_4V71_001 | No text annotation | ||
| J6_4V71_002 | No text annotation | ||
| J7_4V71_001 | No text annotation | ||
| J7_4V71_002 | No text annotation |
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