IL_4V71_127

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

4V71|1|BA|G|1992

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V71_127 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.1741

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

4V71|1|BA|A|1669
4V71|1|BA|C|1670
4V71|1|BA|U|1671
4V71|1|BA|A|1672
4V71|1|BA|G|1673
4V71|1|BA|G|1674
*
4V71|1|BA|C|1990
4V71|1|BA|U|1991
4V71|1|BA|G|1992
4V71|1|BA|U|1993

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14