IL_4V71_138

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V71|1|BA|A|1938, 4V71|1|BA|U|1939, 4V71|1|BA|U|1944, 4V71|1|BA|U|1963

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V71_138 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.5952

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

4V71|1|BA|C|1934
4V71|1|BA|G|1935
4V71|1|BA|A|1936
4V71|1|BA|A|1937
4V71|1|BA|A|1938
4V71|1|BA|U|1939
4V71|1|BA|U|1940
4V71|1|BA|C|1941
4V71|1|BA|C|1942
4V71|1|BA|U|1943
4V71|1|BA|U|1944
4V71|1|BA|G|1945
*
4V71|1|BA|C|1961
4V71|1|BA|C|1962
4V71|1|BA|U|1963
4V71|1|BA|G|1964

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain AA

Small subunit ribosomal RNA; SSU rRNA