IL_4V71_147

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V71|1|BA|G|2112, 4V71|1|BA|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V71_147 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.1696

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V71|1|BA|G|2110
4V71|1|BA|U|2111
4V71|1|BA|G|2112
4V71|1|BA|U|2113
4V71|1|BA|A|2114
4V71|1|BA|G|2115
4V71|1|BA|G|2116
4V71|1|BA|A|2117
4V71|1|BA|U|2118
4V71|1|BA|A|2119
4V71|1|BA|G|2120
*
4V71|1|BA|C|2178
4V71|1|BA|C|2179

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L1