IL_4V72_020

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

4V72|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V72_020 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.2091

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V72|1|AA|U|409
4V72|1|AA|G|410
4V72|1|AA|A|411
4V72|1|AA|A|412
4V72|1|AA|G|413
4V72|1|AA|A|414
4V72|1|AA|A|415
4V72|1|AA|G|416
*
4V72|1|AA|U|427
4V72|1|AA|G|428
4V72|1|AA|U|429
4V72|1|AA|A|430
4V72|1|AA|A|431
4V72|1|AA|A|432
4V72|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4