IL_4V72_067

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V72_067 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.3473

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V72|1|BA|G|24
4V72|1|BA|U|25
4V72|1|BA|G|26
4V72|1|BA|G|27
4V72|1|BA|A|28
4V72|1|BA|U|29
4V72|1|BA|G|30
*
4V72|1|BA|C|510
4V72|1|BA|U|511
4V72|1|BA|G|512
4V72|1|BA|A|513
4V72|1|BA|A|514
4V72|1|BA|A|515
4V72|1|BA|C|516

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BQ

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22