IL_4V72_100

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

4V72|1|BA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V72_100 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.3137

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V72|1|BA|U|1018
4V72|1|BA|U|1019
4V72|1|BA|A|1020
4V72|1|BA|A|1021
4V72|1|BA|G|1022
4V72|1|BA|U|1023
4V72|1|BA|G|1024
*
4V72|1|BA|C|1140
4V72|1|BA|U|1141
4V72|1|BA|A|1142
4V72|1|BA|A|1143
4V72|1|BA|A|1144

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L13