IL_4V72_126

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V72_126 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.2082

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

4V72|1|BA|G|1666
4V72|1|BA|G|1667
4V72|1|BA|A|1668
4V72|1|BA|A|1669
*
4V72|1|BA|U|1993
4V72|1|BA|C|1994

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14