3D structure

PDB id
4V72 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)
Experimental method
ELECTRON MICROSCOPY
Resolution
13 Å

Loop

Sequence
GUGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
4V72|1|BA|G|2112, 4V72|1|BA|A|2119
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V72_148 not in the Motif Atlas
Geometric match to IL_7V9E_001
Geometric discrepancy: 0.1494
The information below is about IL_7V9E_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.2
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

4V72|1|BA|G|2110
4V72|1|BA|U|2111
4V72|1|BA|G|2112
4V72|1|BA|U|2113
4V72|1|BA|A|2114
4V72|1|BA|G|2115
4V72|1|BA|G|2116
4V72|1|BA|A|2117
4V72|1|BA|U|2118
4V72|1|BA|A|2119
4V72|1|BA|G|2120
*
4V72|1|BA|C|2178
4V72|1|BA|C|2179

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain A3
Transfer RNA; tRNA
Chain AG
30S ribosomal protein S7
Chain B5
50S ribosomal protein L1

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1653 s