IL_4V72_161

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

CAU*GUACG

Length

8 nucleotides

Bulged bases

4V72|1|BA|A|2572, 4V72|1|BA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V72_161 not in the Motif Atlas

Geometric match to IL_7VFT_005

Geometric discrepancy: 0.3814

The information below is about IL_7VFT_005

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_00627.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

24

Unit IDs

4V72|1|BA|C|2512
4V72|1|BA|A|2513
4V72|1|BA|U|2514
*
4V72|1|BA|G|2570
4V72|1|BA|U|2571
4V72|1|BA|A|2572
4V72|1|BA|C|2573
4V72|1|BA|G|2574

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13