IL_4V73_091

3D structure

PDB id

4V73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V73_091 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.297

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V73|1|BA|G|875
4V73|1|BA|C|876
4V73|1|BA|A|877
4V73|1|BA|A|878
4V73|1|BA|G|879
*
4V73|1|BA|C|898
4V73|1|BA|A|899
4V73|1|BA|A|900
4V73|1|BA|C|901
4V73|1|BA|C|902

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain BM

50S ribosomal protein L16