4V73 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V73_001 | No text annotation | ||
| HL_4V73_002 | tRNA anticodon loop | ||
| HL_4V73_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V73_004 | No text annotation | ||
| HL_4V73_005 | tRNA anticodon loop | ||
| HL_4V73_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V73_007 | No text annotation | ||
| HL_4V73_111 | No text annotation | ||
| HL_4V73_008 | No text annotation | ||
| HL_4V73_009 | GNRA | ||
| HL_4V73_010 | GNRA | ||
| HL_4V73_011 | No text annotation | ||
| HL_4V73_012 | GNRA related | ||
| HL_4V73_013 | GNRA | ||
| HL_4V73_014 | No text annotation | ||
| HL_4V73_015 | UNCG | ||
| HL_4V73_016 | GNRA | ||
| HL_4V73_017 | UNCG | ||
| HL_4V73_018 | No text annotation | ||
| HL_4V73_019 | No text annotation | ||
| HL_4V73_020 | GNRA-like with tWH | ||
| HL_4V73_021 | No text annotation | ||
| HL_4V73_022 | GNRA | ||
| HL_4V73_023 | No text annotation | ||
| HL_4V73_024 | No text annotation | ||
| HL_4V73_025 | GNRA | ||
| HL_4V73_026 | GNRA | ||
| HL_4V73_027 | No text annotation | ||
| HL_4V73_028 | GNRA | ||
| HL_4V73_029 | No text annotation | ||
| HL_4V73_030 | GNRA | ||
| HL_4V73_031 | T-loop related | ||
| HL_4V73_032 | No text annotation | ||
| HL_4V73_033 | GNRA | ||
| HL_4V73_034 | No text annotation | ||
| HL_4V73_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V73_036 | No text annotation | ||
| HL_4V73_037 | UNCG | ||
| HL_4V73_038 | GNRA | ||
| HL_4V73_039 | Pseudoknot with intercalation | ||
| HL_4V73_040 | No text annotation | ||
| HL_4V73_041 | No text annotation | ||
| HL_4V73_042 | No text annotation | ||
| HL_4V73_114 | No text annotation | ||
| HL_4V73_043 | No text annotation | ||
| HL_4V73_044 | No text annotation | ||
| HL_4V73_045 | No text annotation | ||
| HL_4V73_046 | No text annotation | ||
| HL_4V73_047 | T-loop with 2 stacked bulged bases | ||
| HL_4V73_048 | No text annotation | ||
| HL_4V73_049 | T-loop with unstacked turn | ||
| HL_4V73_050 | No text annotation | ||
| HL_4V73_051 | No text annotation | ||
| HL_4V73_052 | GNRA | ||
| HL_4V73_053 | GNRA | ||
| HL_4V73_054 | No text annotation | ||
| HL_4V73_055 | T-loop with 2 stacked bulged bases | ||
| HL_4V73_056 | No text annotation | ||
| HL_4V73_057 | GNRA | ||
| HL_4V73_058 | No text annotation | ||
| HL_4V73_115 | GNRA | ||
| HL_4V73_059 | GNRA wlth tandem sheared | ||
| HL_4V73_060 | No text annotation | ||
| HL_4V73_061 | UNCG variation | ||
| HL_4V73_062 | No text annotation | ||
| HL_4V73_063 | No text annotation | ||
| HL_4V73_064 | GNRA with extra cWW | ||
| HL_4V73_065 | No text annotation | ||
| HL_4V73_066 | No text annotation | ||
| HL_4V73_067 | No text annotation | ||
| HL_4V73_068 | No text annotation | ||
| HL_4V73_069 | GNRA | ||
| HL_4V73_070 | No text annotation | ||
| HL_4V73_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V73_072 | GNRA | ||
| HL_4V73_073 | No text annotation | ||
| HL_4V73_074 | No text annotation | ||
| HL_4V73_116 | No text annotation | ||
| HL_4V73_075 | Pseudoknot geometry with 3' bulge | ||
| HL_4V73_076 | No text annotation | ||
| HL_4V73_077 | Mini UNCG | ||
| HL_4V73_078 | No text annotation | ||
| HL_4V73_079 | GNRA | ||
| HL_4V73_080 | UNCG | ||
| HL_4V73_081 | No text annotation | ||
| HL_4V73_082 | No text annotation | ||
| HL_4V73_083 | No text annotation | ||
| HL_4V73_084 | GNRA related | ||
| HL_4V73_085 | GNRA | ||
| HL_4V73_086 | No text annotation | ||
| HL_4V73_087 | No text annotation | ||
| HL_4V73_088 | No text annotation | ||
| HL_4V73_089 | No text annotation | ||
| HL_4V73_090 | UNCG | ||
| HL_4V73_091 | No text annotation | ||
| HL_4V73_092 | No text annotation | ||
| HL_4V73_093 | No text annotation | ||
| HL_4V73_094 | No text annotation | ||
| HL_4V73_095 | No text annotation | ||
| HL_4V73_112 | Pseudoknot geometry | ||
| HL_4V73_096 | GNRA | ||
| HL_4V73_097 | GNRA | ||
| HL_4V73_098 | No text annotation | ||
| HL_4V73_099 | No text annotation | ||
| HL_4V73_100 | GNRA variation | ||
| HL_4V73_101 | No text annotation | ||
| HL_4V73_102 | GNRA | ||
| HL_4V73_103 | GNRA related | ||
| HL_4V73_104 | Ribsomal LSU H95 | ||
| HL_4V73_105 | No text annotation | ||
| HL_4V73_106 | Mini UNCG | ||
| HL_4V73_107 | No text annotation | ||
| HL_4V73_108 | GNRA | ||
| HL_4V73_113 | No text annotation | ||
| HL_4V73_109 | No text annotation | ||
| HL_4V73_110 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V73_001 | Single bulged G | ||
| IL_4V73_002 | Single bulged A | ||
| IL_4V73_003 | No text annotation | ||
| IL_4V73_004 | Minor groove platform | ||
| IL_4V73_005 | Single bulged G, near cWW | ||
| IL_4V73_183 | Multiple bulged bases | ||
| IL_4V73_006 | Minor groove platform with extra cWW | ||
| IL_4V73_007 | Minor groove platform | ||
| IL_4V73_008 | Major groove intercalation | ||
| IL_4V73_009 | Isolated non-canonical cWW pair | ||
| IL_4V73_010 | No text annotation | ||
| IL_4V73_011 | Isolated cWH basepair | ||
| IL_4V73_012 | tWH-tWH-tHW-tHW | ||
| IL_4V73_013 | Kink-turn with non-sequential stacking | ||
| IL_4V73_014 | No text annotation | ||
| IL_4V73_015 | C-loop | ||
| IL_4V73_016 | Single bulged U | ||
| IL_4V73_017 | No text annotation | ||
| IL_4V73_018 | No text annotation | ||
| IL_4V73_019 | No text annotation | ||
| IL_4V73_020 | tSH-tHW-tWW | ||
| IL_4V73_021 | No text annotation | ||
| IL_4V73_022 | Single stack bend | ||
| IL_4V73_023 | Single bulged A | ||
| IL_4V73_024 | SSU/LSU pseudoknot | ||
| IL_4V73_025 | Kink-turn related | ||
| IL_4V73_026 | No text annotation | ||
| IL_4V73_027 | tSH-tHW-tHS | ||
| IL_4V73_028 | Major groove platform | ||
| IL_4V73_029 | Major groove minor groove platform; mini C-loop | ||
| IL_4V73_030 | No text annotation | ||
| IL_4V73_031 | Major groove platform; stack outside cWW | ||
| IL_4V73_032 | No text annotation | ||
| IL_4V73_184 | Single stack bend | ||
| IL_4V73_033 | Tandem non-canonical cWW pairs | ||
| IL_4V73_034 | No text annotation | ||
| IL_4V73_035 | Kink-turn | ||
| IL_4V73_036 | Left turn | ||
| IL_4V73_037 | tSH-tHW-tHS | ||
| IL_4V73_038 | No text annotation | ||
| IL_4V73_171 | No text annotation | ||
| IL_4V73_039 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V73_040 | Single bulged A | ||
| IL_4V73_185 | No text annotation | ||
| IL_4V73_041 | No text annotation | ||
| IL_4V73_042 | No text annotation | ||
| IL_4V73_043 | No text annotation | ||
| IL_4V73_044 | Minor groove platform | ||
| IL_4V73_045 | Single stack bend | ||
| IL_4V73_046 | No text annotation | ||
| IL_4V73_047 | Single bulged U | ||
| IL_4V73_048 | No text annotation | ||
| IL_4V73_049 | Minor groove platform | ||
| IL_4V73_050 | Single bulged A | ||
| IL_4V73_051 | Isolated non-canonical cWW pair | ||
| IL_4V73_052 | No text annotation | ||
| IL_4V73_053 | Minor groove platform | ||
| IL_4V73_054 | No text annotation | ||
| IL_4V73_055 | No text annotation | ||
| IL_4V73_056 | 180 degree turn | ||
| IL_4V73_057 | Double sheared with non-canonical cWW | ||
| IL_4V73_058 | No text annotation | ||
| IL_4V73_059 | No text annotation | ||
| IL_4V73_060 | Partly complementary | ||
| IL_4V73_172 | Isolated non-canonical cWW pair | ||
| IL_4V73_061 | Tandem non-canonical cWW pairs | ||
| IL_4V73_062 | Double sheared | ||
| IL_4V73_063 | No text annotation | ||
| IL_4V73_064 | No text annotation | ||
| IL_4V73_065 | No text annotation | ||
| IL_4V73_066 | Triple sheared with non-canonical cWW | ||
| IL_4V73_067 | Isolated cWS basepair | ||
| IL_4V73_068 | Minor groove platform | ||
| IL_4V73_069 | No text annotation | ||
| IL_4V73_186 | No text annotation | ||
| IL_4V73_173 | Single stack bend | ||
| IL_4V73_070 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V73_071 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V73_072 | No text annotation | ||
| IL_4V73_073 | No text annotation | ||
| IL_4V73_074 | No text annotation | ||
| IL_4V73_174 | Isolated non-canonical cWW pair | ||
| IL_4V73_075 | Double sheared | ||
| IL_4V73_076 | Isolated non-canonical cWW pair | ||
| IL_4V73_077 | AAA cross-strand stack | ||
| IL_4V73_078 | Isolated non-canonical cWW pair | ||
| IL_4V73_079 | tHW-tHW cross-strand stack | ||
| IL_4V73_080 | Single bulged A | ||
| IL_4V73_081 | Single bulged G | ||
| IL_4V73_082 | Triple sheared | ||
| IL_4V73_083 | Major groove platform | ||
| IL_4V73_084 | Multiple bulged bases | ||
| IL_4V73_085 | No text annotation | ||
| IL_4V73_187 | Single stack bend | ||
| IL_4V73_086 | No text annotation | ||
| IL_4V73_087 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V73_088 | Single bulged G | ||
| IL_4V73_089 | C-loop | ||
| IL_4V73_090 | Isolated non-canonical cWW pair | ||
| IL_4V73_091 | Double sheared with non-canonical cWW | ||
| IL_4V73_175 | No text annotation | ||
| IL_4V73_092 | No text annotation | ||
| IL_4V73_093 | No text annotation | ||
| IL_4V73_094 | UAA/GAN | ||
| IL_4V73_095 | SSU/LSU pseudoknot | ||
| IL_4V73_096 | Single bulged U | ||
| IL_4V73_097 | Kink-turn related | ||
| IL_4V73_098 | No text annotation | ||
| IL_4V73_099 | Isolated non-canonical cWW pair | ||
| IL_4V73_100 | Tandem non-canonical cWW pairs | ||
| IL_4V73_101 | Kink-turn | ||
| IL_4V73_102 | No text annotation | ||
| IL_4V73_103 | Multiple bulged bases | ||
| IL_4V73_104 | Isolated cWS basepair | ||
| IL_4V73_105 | No text annotation | ||
| IL_4V73_106 | Kink-turn | ||
| IL_4V73_107 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V73_108 | Major groove platform; stack outside cWW | ||
| IL_4V73_109 | Major groove minor groove platform with tHH | ||
| IL_4V73_188 | No text annotation | ||
| IL_4V73_110 | UAA/GAN | ||
| IL_4V73_189 | No text annotation | ||
| IL_4V73_111 | tSH-tHW-tHS | ||
| IL_4V73_112 | No text annotation | ||
| IL_4V73_113 | UAA/GAN | ||
| IL_4V73_114 | Tandem non-canonical cWW pairs | ||
| IL_4V73_115 | tSH-tHW | ||
| IL_4V73_116 | No text annotation | ||
| IL_4V73_117 | tSH-tHW-tHS | ||
| IL_4V73_118 | No text annotation | ||
| IL_4V73_119 | Single bulged A | ||
| IL_4V73_120 | No text annotation | ||
| IL_4V73_121 | No text annotation | ||
| IL_4V73_176 | Isolated tWW turn | ||
| IL_4V73_177 | Major groove platform; stack outside cWW | ||
| IL_4V73_178 | No text annotation | ||
| IL_4V73_179 | Intercalated tWH | ||
| IL_4V73_122 | tSH-tSH-tHH-tHS | ||
| IL_4V73_123 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V73_124 | Triple sheared | ||
| IL_4V73_125 | Single bulged C | ||
| IL_4V73_126 | Single bulged A | ||
| IL_4V73_127 | Kink-turn related | ||
| IL_4V73_128 | Minor groove platform, major groove intercalation | ||
| IL_4V73_129 | Major groove intercalation | ||
| IL_4V73_130 | Minor groove platform, major groove intercalation | ||
| IL_4V73_180 | No text annotation | ||
| IL_4V73_131 | UAA/GAN related | ||
| IL_4V73_132 | Bulged stacked bases | ||
| IL_4V73_133 | No text annotation | ||
| IL_4V73_134 | Major groove platform | ||
| IL_4V73_135 | No text annotation | ||
| IL_4V73_136 | Single bulged U | ||
| IL_4V73_137 | Minor groove platform | ||
| IL_4V73_138 | Single stack bend | ||
| IL_4V73_139 | Isolated tHS basepair with bulges | ||
| IL_4V73_140 | No text annotation | ||
| IL_4V73_141 | Isolated non-canonical cWW pair | ||
| IL_4V73_142 | No text annotation | ||
| IL_4V73_190 | No text annotation | ||
| IL_4V73_143 | No text annotation | ||
| IL_4V73_181 | No text annotation | ||
| IL_4V73_182 | Isolated non-canonical cWW pair | ||
| IL_4V73_144 | Single bulged U | ||
| IL_4V73_145 | Double sheared | ||
| IL_4V73_146 | No text annotation | ||
| IL_4V73_147 | Major groove platform | ||
| IL_4V73_148 | Major groove platform | ||
| IL_4V73_149 | Major groove minor groove platform with extra cWW | ||
| IL_4V73_150 | Double sheared with non-canonical cWW | ||
| IL_4V73_151 | Major groove platform | ||
| IL_4V73_152 | Isolated non-canonical cWW with bulges | ||
| IL_4V73_153 | Multiple bulged bases | ||
| IL_4V73_154 | Major groove platform with intercalation | ||
| IL_4V73_155 | Single bulged A | ||
| IL_4V73_156 | tSH-tHS-tHW | ||
| IL_4V73_157 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V73_158 | No text annotation | ||
| IL_4V73_191 | C-loop | ||
| IL_4V73_159 | UAA/GAN related, with intercalation | ||
| IL_4V73_160 | Multiple bulged bases | ||
| IL_4V73_161 | UAA/GAN with extra cWW | ||
| IL_4V73_162 | No text annotation | ||
| IL_4V73_163 | Major groove intercalation | ||
| IL_4V73_164 | Multiple bulged bases with non-canonical cWW | ||
| IL_4V73_165 | No text annotation | ||
| IL_4V73_166 | Major groove intercalation | ||
| IL_4V73_167 | No text annotation | ||
| IL_4V73_168 | Major groove minor groove platform; mini C-loop | ||
| IL_4V73_169 | Symmetric double minor groove platform | ||
| IL_4V73_170 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V73_001 | No text annotation | ||
| J3_4V73_027 | No text annotation | ||
| J3_4V73_002 | No text annotation | ||
| J3_4V73_028 | No text annotation | ||
| J3_4V73_003 | No text annotation | ||
| J3_4V73_004 | No text annotation | ||
| J3_4V73_029 | No text annotation | ||
| J3_4V73_030 | No text annotation | ||
| J3_4V73_005 | No text annotation | ||
| J3_4V73_006 | No text annotation | ||
| J3_4V73_007 | No text annotation | ||
| J3_4V73_031 | No text annotation | ||
| J3_4V73_008 | No text annotation | ||
| J3_4V73_009 | No text annotation | ||
| J3_4V73_010 | No text annotation | ||
| J3_4V73_011 | No text annotation | ||
| J3_4V73_032 | No text annotation | ||
| J3_4V73_012 | No text annotation | ||
| J3_4V73_033 | No text annotation | ||
| J3_4V73_034 | No text annotation | ||
| J3_4V73_013 | No text annotation | ||
| J3_4V73_035 | No text annotation | ||
| J3_4V73_014 | No text annotation | ||
| J3_4V73_015 | No text annotation | ||
| J3_4V73_016 | No text annotation | ||
| J3_4V73_017 | No text annotation | ||
| J3_4V73_018 | No text annotation | ||
| J3_4V73_019 | No text annotation | ||
| J3_4V73_036 | No text annotation | ||
| J3_4V73_020 | No text annotation | ||
| J3_4V73_021 | Kink-turn 3-way junction | ||
| J3_4V73_037 | No text annotation | ||
| J3_4V73_022 | No text annotation | ||
| J3_4V73_023 | No text annotation | ||
| J3_4V73_024 | No text annotation | ||
| J3_4V73_025 | No text annotation | ||
| J3_4V73_026 | No text annotation | ||
| J4_4V73_001 | tRNA junction | ||
| J4_4V73_002 | tRNA junction | ||
| J4_4V73_017 | No text annotation | ||
| J4_4V73_003 | No text annotation | ||
| J4_4V73_004 | No text annotation | ||
| J4_4V73_005 | No text annotation | ||
| J4_4V73_006 | No text annotation | ||
| J4_4V73_007 | No text annotation | ||
| J4_4V73_008 | No text annotation | ||
| J4_4V73_009 | No text annotation | ||
| J4_4V73_010 | No text annotation | ||
| J4_4V73_011 | No text annotation | ||
| J4_4V73_012 | No text annotation | ||
| J4_4V73_013 | No text annotation | ||
| J4_4V73_018 | No text annotation | ||
| J4_4V73_014 | No text annotation | ||
| J4_4V73_015 | No text annotation | ||
| J4_4V73_016 | No text annotation | ||
| J5_4V73_001 | No text annotation | ||
| J5_4V73_002 | No text annotation | ||
| J5_4V73_003 | No text annotation | ||
| J5_4V73_004 | No text annotation | ||
| J5_4V73_005 | No text annotation | ||
| J5_4V73_006 | No text annotation | ||
| J5_4V73_007 | No text annotation | ||
| J5_4V73_008 | No text annotation | ||
| J5_4V73_009 | No text annotation | ||
| J5_4V73_011 | No text annotation | ||
| J5_4V73_010 | No text annotation | ||
| J6_4V73_001 | No text annotation | ||
| J6_4V73_003 | No text annotation | ||
| J6_4V73_002 | No text annotation | ||
| J7_4V73_001 | No text annotation | ||
| J7_4V73_002 | No text annotation |
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