IL_4V73_109

3D structure

PDB id

4V73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

4V73|1|BA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V73_109 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.3468

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4V73|1|BA|C|1319
4V73|1|BA|C|1320
4V73|1|BA|A|1321
4V73|1|BA|A|1322
4V73|1|BA|C|1323
*
4V73|1|BA|G|1331
4V73|1|BA|G|1332
4V73|1|BA|G|1333

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L22

Chain BT

50S ribosomal protein L23