IL_4V73_130

3D structure

PDB id

4V73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V73_130 not in the Motif Atlas

Geometric match to IL_4V9F_066

Geometric discrepancy: 0.3615

The information below is about IL_4V9F_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V73|1|BA|G|1846
4V73|1|BA|A|1847
4V73|1|BA|A|1848
4V73|1|BA|G|1849
*
4V73|1|BA|C|1893
4V73|1|BA|C|1894

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A3

Transfer RNA; tRNA

Chain AA

Small subunit ribosomal RNA; SSU rRNA