IL_4V73_172

3D structure

PDB id

4V73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V73_172 not in the Motif Atlas

Homologous match to IL_6CZR_411

Geometric discrepancy: 0.1749

The information below is about IL_6CZR_411

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

4V73|1|AA|C|1412
4V73|1|AA|A|1413
4V73|1|AA|U|1414
*
4V73|1|AA|G|1486
4V73|1|AA|G|1487
4V73|1|AA|G|1488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA