IL_4V76_070

3D structure

PDB id

4V76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V76_070 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.242

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V76|1|BA|G|188
4V76|1|BA|G|189
4V76|1|BA|A|190
4V76|1|BA|A|191
4V76|1|BA|C|192
4V76|1|BA|U|193
4V76|1|BA|G|194
*
4V76|1|BA|C|201
4V76|1|BA|U|202
4V76|1|BA|A|203
4V76|1|BA|A|204
4V76|1|BA|G|205
4V76|1|BA|U|206
4V76|1|BA|A|207
4V76|1|BA|C|208

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15

Chain BX

50S ribosomal protein L28