3D structure

PDB id
4V77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
GGAG*UGAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V77_080 not in the Motif Atlas
Homologous match to IL_4WF9_016
Geometric discrepancy: 0.3259
The information below is about IL_4WF9_016
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.15
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
34

Unit IDs

4V77|1|BA|G|536
4V77|1|BA|G|537
4V77|1|BA|A|538
4V77|1|BA|G|539
*
4V77|1|BA|U|554
4V77|1|BA|G|555
4V77|1|BA|A|556
4V77|1|BA|C|557

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BJ
50S ribosomal protein L13
Chain BQ
50S ribosomal protein L20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4268 s
Application loaded.