4V77 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V77_001 | No text annotation | ||
| HL_4V77_002 | tRNA anticodon loop | ||
| HL_4V77_003 | T-loop with 2 stacked bulged bases | ||
| HL_4V77_004 | No text annotation | ||
| HL_4V77_005 | tRNA anticodon loop | ||
| HL_4V77_006 | T-loop with 2 stacked bulged bases | ||
| HL_4V77_007 | No text annotation | ||
| HL_4V77_110 | No text annotation | ||
| HL_4V77_008 | No text annotation | ||
| HL_4V77_009 | GNRA | ||
| HL_4V77_010 | GNRA | ||
| HL_4V77_011 | Externally structured | ||
| HL_4V77_012 | GNRA related | ||
| HL_4V77_013 | GNRA | ||
| HL_4V77_014 | No text annotation | ||
| HL_4V77_015 | UNCG | ||
| HL_4V77_016 | GNRA | ||
| HL_4V77_017 | UNCG | ||
| HL_4V77_018 | No text annotation | ||
| HL_4V77_019 | No text annotation | ||
| HL_4V77_020 | GNRA-like with tWH | ||
| HL_4V77_021 | No text annotation | ||
| HL_4V77_022 | GNRA | ||
| HL_4V77_023 | No text annotation | ||
| HL_4V77_024 | No text annotation | ||
| HL_4V77_025 | GNRA | ||
| HL_4V77_026 | GNRA | ||
| HL_4V77_027 | No text annotation | ||
| HL_4V77_028 | GNRA | ||
| HL_4V77_029 | No text annotation | ||
| HL_4V77_030 | GNRA | ||
| HL_4V77_031 | T-loop related | ||
| HL_4V77_032 | No text annotation | ||
| HL_4V77_033 | GNRA | ||
| HL_4V77_034 | No text annotation | ||
| HL_4V77_035 | T-loop with 3 stacked bulged bases | ||
| HL_4V77_036 | No text annotation | ||
| HL_4V77_037 | UNCG | ||
| HL_4V77_038 | GNRA | ||
| HL_4V77_039 | tRNA anticodon loop | ||
| HL_4V77_040 | No text annotation | ||
| HL_4V77_041 | No text annotation | ||
| HL_4V77_042 | Externally structured | ||
| HL_4V77_043 | No text annotation | ||
| HL_4V77_044 | No text annotation | ||
| HL_4V77_045 | No text annotation | ||
| HL_4V77_046 | No text annotation | ||
| HL_4V77_047 | No text annotation | ||
| HL_4V77_048 | No text annotation | ||
| HL_4V77_049 | T-loop with unstacked turn | ||
| HL_4V77_050 | No text annotation | ||
| HL_4V77_051 | Pseudoknot geometry | ||
| HL_4V77_052 | GNRA | ||
| HL_4V77_053 | GNRA | ||
| HL_4V77_054 | No text annotation | ||
| HL_4V77_055 | No text annotation | ||
| HL_4V77_112 | T-loop with 2 stacked bulged bases | ||
| HL_4V77_056 | No text annotation | ||
| HL_4V77_057 | GNRA | ||
| HL_4V77_058 | No text annotation | ||
| HL_4V77_059 | No text annotation | ||
| HL_4V77_060 | No text annotation | ||
| HL_4V77_061 | UNCG variation | ||
| HL_4V77_062 | No text annotation | ||
| HL_4V77_063 | No text annotation | ||
| HL_4V77_064 | GNRA | ||
| HL_4V77_065 | No text annotation | ||
| HL_4V77_066 | No text annotation | ||
| HL_4V77_067 | GNRA wlth tandem sheared | ||
| HL_4V77_068 | No text annotation | ||
| HL_4V77_069 | GNRA | ||
| HL_4V77_070 | T-loop with 2 stacked bulged bases | ||
| HL_4V77_071 | Pseudoknot geometry with 3' bulge | ||
| HL_4V77_072 | GNRA | ||
| HL_4V77_073 | No text annotation | ||
| HL_4V77_074 | No text annotation | ||
| HL_4V77_075 | No text annotation | ||
| HL_4V77_076 | No text annotation | ||
| HL_4V77_077 | Mini UNCG | ||
| HL_4V77_078 | No text annotation | ||
| HL_4V77_079 | GNRA | ||
| HL_4V77_080 | UNCG | ||
| HL_4V77_081 | No text annotation | ||
| HL_4V77_082 | No text annotation | ||
| HL_4V77_083 | No text annotation | ||
| HL_4V77_084 | GNRA related | ||
| HL_4V77_085 | No text annotation | ||
| HL_4V77_086 | No text annotation | ||
| HL_4V77_087 | No text annotation | ||
| HL_4V77_113 | No text annotation | ||
| HL_4V77_088 | No text annotation | ||
| HL_4V77_089 | UNCG | ||
| HL_4V77_090 | No text annotation | ||
| HL_4V77_091 | No text annotation | ||
| HL_4V77_092 | No text annotation | ||
| HL_4V77_093 | No text annotation | ||
| HL_4V77_094 | No text annotation | ||
| HL_4V77_095 | GNRA | ||
| HL_4V77_096 | GNRA | ||
| HL_4V77_097 | No text annotation | ||
| HL_4V77_098 | No text annotation | ||
| HL_4V77_099 | No text annotation | ||
| HL_4V77_100 | No text annotation | ||
| HL_4V77_101 | GNRA | ||
| HL_4V77_102 | No text annotation | ||
| HL_4V77_103 | Ribsomal LSU H95 | ||
| HL_4V77_104 | No text annotation | ||
| HL_4V77_105 | No text annotation | ||
| HL_4V77_106 | No text annotation | ||
| HL_4V77_107 | GNRA | ||
| HL_4V77_111 | No text annotation | ||
| HL_4V77_108 | No text annotation | ||
| HL_4V77_109 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V77_001 | Single bulged G | ||
| IL_4V77_002 | Single bulged A | ||
| IL_4V77_003 | No text annotation | ||
| IL_4V77_004 | Single stack bend | ||
| IL_4V77_005 | Multiple bulged bases | ||
| IL_4V77_006 | Minor groove platform with extra cWW | ||
| IL_4V77_007 | Minor groove platform | ||
| IL_4V77_008 | Stack outside cWW | ||
| IL_4V77_009 | Isolated non-canonical cWW pair | ||
| IL_4V77_010 | Minor groove platform related | ||
| IL_4V77_011 | Isolated cWH basepair | ||
| IL_4V77_012 | tWH-tWH-tHW-tHW | ||
| IL_4V77_013 | No text annotation | ||
| IL_4V77_014 | Kink-turn with non-sequential stacking | ||
| IL_4V77_191 | No text annotation | ||
| IL_4V77_015 | No text annotation | ||
| IL_4V77_016 | C-loop | ||
| IL_4V77_017 | Single bulged U | ||
| IL_4V77_018 | No text annotation | ||
| IL_4V77_019 | No text annotation | ||
| IL_4V77_020 | No text annotation | ||
| IL_4V77_021 | tSH-tHW-tWW | ||
| IL_4V77_022 | No text annotation | ||
| IL_4V77_023 | SSU/LSU pseudoknot | ||
| IL_4V77_024 | Kink-turn related | ||
| IL_4V77_025 | No text annotation | ||
| IL_4V77_026 | tSH-tHW-tHS | ||
| IL_4V77_027 | Major groove platform | ||
| IL_4V77_028 | Major groove minor groove platform; mini C-loop | ||
| IL_4V77_029 | No text annotation | ||
| IL_4V77_030 | Major groove platform; stack outside cWW | ||
| IL_4V77_031 | No text annotation | ||
| IL_4V77_192 | Single stack bend | ||
| IL_4V77_032 | Tandem non-canonical cWW pairs | ||
| IL_4V77_193 | No text annotation | ||
| IL_4V77_033 | No text annotation | ||
| IL_4V77_034 | Kink-turn | ||
| IL_4V77_035 | Left turn | ||
| IL_4V77_036 | tSH-tHW-tHS | ||
| IL_4V77_037 | Isolated cWS basepair | ||
| IL_4V77_038 | Isolated cWH basepair | ||
| IL_4V77_039 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4V77_040 | Single bulged A | ||
| IL_4V77_041 | Single bulged G | ||
| IL_4V77_174 | No text annotation | ||
| IL_4V77_042 | No text annotation | ||
| IL_4V77_043 | No text annotation | ||
| IL_4V77_044 | Minor groove platform | ||
| IL_4V77_045 | Single stack bend | ||
| IL_4V77_175 | Isolated non-canonical cWW pair | ||
| IL_4V77_046 | Single bulged U | ||
| IL_4V77_176 | No text annotation | ||
| IL_4V77_047 | No text annotation | ||
| IL_4V77_048 | Minor groove platform | ||
| IL_4V77_177 | Isolated near basepair | ||
| IL_4V77_049 | Single bulged U | ||
| IL_4V77_050 | Isolated non-canonical cWW pair | ||
| IL_4V77_051 | No text annotation | ||
| IL_4V77_052 | Minor groove platform | ||
| IL_4V77_053 | No text annotation | ||
| IL_4V77_178 | No text annotation | ||
| IL_4V77_054 | No text annotation | ||
| IL_4V77_055 | No text annotation | ||
| IL_4V77_056 | 180 degree turn | ||
| IL_4V77_057 | Double sheared with non-canonical cWW | ||
| IL_4V77_194 | No text annotation | ||
| IL_4V77_058 | No text annotation | ||
| IL_4V77_059 | No text annotation | ||
| IL_4V77_060 | No text annotation | ||
| IL_4V77_061 | Isolated non-canonical cWW pair | ||
| IL_4V77_062 | Isolated non-canonical cWW pair | ||
| IL_4V77_063 | No text annotation | ||
| IL_4V77_179 | Tandem non-canonical cWW pairs | ||
| IL_4V77_064 | No text annotation | ||
| IL_4V77_065 | No text annotation | ||
| IL_4V77_066 | No text annotation | ||
| IL_4V77_067 | No text annotation | ||
| IL_4V77_068 | Triple sheared with non-canonical cWW | ||
| IL_4V77_069 | Single bulged A | ||
| IL_4V77_070 | Minor groove platform | ||
| IL_4V77_071 | Single stack bend | ||
| IL_4V77_072 | No text annotation | ||
| IL_4V77_073 | Single stack bend | ||
| IL_4V77_074 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V77_075 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V77_076 | No text annotation | ||
| IL_4V77_077 | No text annotation | ||
| IL_4V77_078 | No text annotation | ||
| IL_4V77_079 | No text annotation | ||
| IL_4V77_080 | Double sheared | ||
| IL_4V77_195 | Isolated non-canonical cWW pair | ||
| IL_4V77_081 | AAA cross-strand stack | ||
| IL_4V77_082 | No text annotation | ||
| IL_4V77_083 | tHW-tHW cross-strand stack | ||
| IL_4V77_084 | Single bulged A | ||
| IL_4V77_085 | Quadruple sheared | ||
| IL_4V77_086 | Other IL | ||
| IL_4V77_087 | Multiple bulged bases | ||
| IL_4V77_088 | No text annotation | ||
| IL_4V77_196 | No text annotation | ||
| IL_4V77_089 | No text annotation | ||
| IL_4V77_090 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V77_091 | Single bulged G | ||
| IL_4V77_092 | No text annotation | ||
| IL_4V77_093 | Isolated cWS basepair | ||
| IL_4V77_094 | Double sheared with non-canonical cWW | ||
| IL_4V77_180 | No text annotation | ||
| IL_4V77_095 | No text annotation | ||
| IL_4V77_096 | Single bulged C | ||
| IL_4V77_097 | UAA/GAN | ||
| IL_4V77_098 | SSU/LSU pseudoknot | ||
| IL_4V77_099 | Single bulged U | ||
| IL_4V77_100 | Kink-turn related | ||
| IL_4V77_101 | No text annotation | ||
| IL_4V77_102 | Isolated non-canonical cWW pair | ||
| IL_4V77_103 | Tandem non-canonical cWW pairs | ||
| IL_4V77_181 | Kink-turn | ||
| IL_4V77_104 | No text annotation | ||
| IL_4V77_105 | No text annotation | ||
| IL_4V77_106 | Isolated cWS basepair | ||
| IL_4V77_107 | No text annotation | ||
| IL_4V77_108 | Kink-turn | ||
| IL_4V77_109 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V77_110 | Major groove platform; stack outside cWW | ||
| IL_4V77_111 | C-loop | ||
| IL_4V77_112 | UAA/GAN | ||
| IL_4V77_113 | tSH-tHW-tHS | ||
| IL_4V77_114 | No text annotation | ||
| IL_4V77_115 | UAA/GAN | ||
| IL_4V77_116 | No text annotation | ||
| IL_4V77_117 | tSH-tHW | ||
| IL_4V77_118 | No text annotation | ||
| IL_4V77_119 | tSH-tHW-tHS | ||
| IL_4V77_120 | 180 degree turn | ||
| IL_4V77_121 | Single bulged A | ||
| IL_4V77_122 | UAA/GAN variation | ||
| IL_4V77_123 | No text annotation | ||
| IL_4V77_124 | Isolated tWW turn | ||
| IL_4V77_125 | Major groove platform | ||
| IL_4V77_182 | No text annotation | ||
| IL_4V77_126 | Intercalated tWH | ||
| IL_4V77_127 | tSH-tSH-tHH-tHS | ||
| IL_4V77_128 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_4V77_183 | No text annotation | ||
| IL_4V77_129 | No text annotation | ||
| IL_4V77_130 | Single bulged A | ||
| IL_4V77_131 | Kink-turn related | ||
| IL_4V77_132 | Minor groove platform, major groove intercalation | ||
| IL_4V77_133 | Major groove intercalation | ||
| IL_4V77_134 | Minor groove platform | ||
| IL_4V77_184 | No text annotation | ||
| IL_4V77_135 | UAA/GAN related | ||
| IL_4V77_136 | Bulged stacked bases | ||
| IL_4V77_137 | No text annotation | ||
| IL_4V77_138 | Major groove platform | ||
| IL_4V77_139 | No text annotation | ||
| IL_4V77_140 | No text annotation | ||
| IL_4V77_141 | No text annotation | ||
| IL_4V77_142 | Isolated non-canonical cWW pair | ||
| IL_4V77_143 | Isolated non-canonical cWW pair | ||
| IL_4V77_144 | No text annotation | ||
| IL_4V77_145 | No text annotation | ||
| IL_4V77_185 | Isolated non-canonical cWW pair | ||
| IL_4V77_146 | No text annotation | ||
| IL_4V77_197 | No text annotation | ||
| IL_4V77_186 | No text annotation | ||
| IL_4V77_187 | Single bulged U | ||
| IL_4V77_147 | Isolated non-canonical cWW pair | ||
| IL_4V77_148 | Double sheared | ||
| IL_4V77_149 | Single bulged U | ||
| IL_4V77_150 | Single stack bend | ||
| IL_4V77_151 | Major groove platform | ||
| IL_4V77_152 | Major groove platform with extra pair | ||
| IL_4V77_188 | Major groove platform | ||
| IL_4V77_153 | Major groove minor groove platform with extra cWW | ||
| IL_4V77_154 | Double sheared with non-canonical cWW | ||
| IL_4V77_155 | Major groove platform | ||
| IL_4V77_156 | Isolated tHS basepair with bulges | ||
| IL_4V77_157 | No text annotation | ||
| IL_4V77_158 | Major groove platform with intercalation | ||
| IL_4V77_159 | Single bulged A | ||
| IL_4V77_160 | tSH-tHS-tHW | ||
| IL_4V77_161 | C-loop | ||
| IL_4V77_162 | UAA/GAN related, with intercalation | ||
| IL_4V77_163 | Multiple bulged bases | ||
| IL_4V77_164 | UAA/GAN with extra cWW | ||
| IL_4V77_165 | No text annotation | ||
| IL_4V77_166 | Major groove intercalation | ||
| IL_4V77_167 | No text annotation | ||
| IL_4V77_189 | No text annotation | ||
| IL_4V77_168 | No text annotation | ||
| IL_4V77_190 | Isolated non-canonical cWW pair | ||
| IL_4V77_169 | Major groove intercalation | ||
| IL_4V77_170 | No text annotation | ||
| IL_4V77_171 | Major groove minor groove platform; mini C-loop | ||
| IL_4V77_172 | No text annotation | ||
| IL_4V77_173 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V77_001 | No text annotation | ||
| J3_4V77_026 | No text annotation | ||
| J3_4V77_002 | No text annotation | ||
| J3_4V77_027 | No text annotation | ||
| J3_4V77_003 | No text annotation | ||
| J3_4V77_004 | No text annotation | ||
| J3_4V77_028 | No text annotation | ||
| J3_4V77_005 | No text annotation | ||
| J3_4V77_006 | No text annotation | ||
| J3_4V77_007 | No text annotation | ||
| J3_4V77_029 | No text annotation | ||
| J3_4V77_008 | No text annotation | ||
| J3_4V77_009 | No text annotation | ||
| J3_4V77_010 | No text annotation | ||
| J3_4V77_011 | No text annotation | ||
| J3_4V77_030 | No text annotation | ||
| J3_4V77_037 | No text annotation | ||
| J3_4V77_012 | No text annotation | ||
| J3_4V77_013 | No text annotation | ||
| J3_4V77_031 | No text annotation | ||
| J3_4V77_032 | No text annotation | ||
| J3_4V77_014 | No text annotation | ||
| J3_4V77_033 | No text annotation | ||
| J3_4V77_034 | No text annotation | ||
| J3_4V77_015 | No text annotation | ||
| J3_4V77_016 | No text annotation | ||
| J3_4V77_017 | No text annotation | ||
| J3_4V77_018 | No text annotation | ||
| J3_4V77_019 | No text annotation | ||
| J3_4V77_035 | No text annotation | ||
| J3_4V77_036 | No text annotation | ||
| J3_4V77_020 | Kink-turn 3-way junction | ||
| J3_4V77_021 | No text annotation | ||
| J3_4V77_022 | No text annotation | ||
| J3_4V77_023 | No text annotation | ||
| J3_4V77_024 | No text annotation | ||
| J3_4V77_025 | No text annotation | ||
| J4_4V77_001 | tRNA junction | ||
| J4_4V77_002 | tRNA junction | ||
| J4_4V77_003 | No text annotation | ||
| J4_4V77_004 | No text annotation | ||
| J4_4V77_005 | No text annotation | ||
| J4_4V77_006 | No text annotation | ||
| J4_4V77_007 | No text annotation | ||
| J4_4V77_008 | No text annotation | ||
| J4_4V77_009 | No text annotation | ||
| J4_4V77_010 | No text annotation | ||
| J4_4V77_011 | No text annotation | ||
| J4_4V77_012 | No text annotation | ||
| J4_4V77_013 | No text annotation | ||
| J4_4V77_016 | No text annotation | ||
| J4_4V77_014 | No text annotation | ||
| J4_4V77_015 | No text annotation | ||
| J5_4V77_001 | No text annotation | ||
| J5_4V77_002 | No text annotation | ||
| J5_4V77_003 | No text annotation | ||
| J5_4V77_004 | No text annotation | ||
| J5_4V77_005 | No text annotation | ||
| J5_4V77_006 | No text annotation | ||
| J5_4V77_007 | No text annotation | ||
| J5_4V77_008 | No text annotation | ||
| J5_4V77_011 | No text annotation | ||
| J5_4V77_009 | No text annotation | ||
| J5_4V77_010 | No text annotation | ||
| J6_4V77_001 | No text annotation | ||
| J7_4V77_001 | No text annotation | ||
| J7_4V77_002 | No text annotation |
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