IL_4V79_068

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V79_068 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.1371

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V79|1|BA|G|188
4V79|1|BA|G|189
4V79|1|BA|A|190
4V79|1|BA|A|191
4V79|1|BA|C|192
4V79|1|BA|U|193
4V79|1|BA|G|194
*
4V79|1|BA|C|201
4V79|1|BA|U|202
4V79|1|BA|A|203
4V79|1|BA|A|204
4V79|1|BA|G|205
4V79|1|BA|U|206
4V79|1|BA|A|207
4V79|1|BA|C|208

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BX

50S ribosomal protein L28