IL_4V79_089

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V79_089 not in the Motif Atlas

Homologous match to IL_5J7L_273

Geometric discrepancy: 0.3424

The information below is about IL_5J7L_273

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V79|1|BA|U|870
4V79|1|BA|U|871
4V79|1|BA|U|872
*
4V79|1|BA|A|905
4V79|1|BA|U|906
4V79|1|BA|G|907

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain BM

50S ribosomal protein L16