IL_4V79_142

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V79|1|BA|G|2112, 4V79|1|BA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V79_142 not in the Motif Atlas

Geometric match to IL_5TBW_119

Geometric discrepancy: 0.1795

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V79|1|BA|G|2110
4V79|1|BA|U|2111
4V79|1|BA|G|2112
4V79|1|BA|U|2113
4V79|1|BA|A|2114
4V79|1|BA|G|2115
4V79|1|BA|G|2116
4V79|1|BA|A|2117
4V79|1|BA|U|2118
4V79|1|BA|A|2119
4V79|1|BA|G|2120
*
4V79|1|BA|C|2178
4V79|1|BA|C|2179

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L1