3D structure

PDB id
4V79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
CGAUGGUAG*CGAGAGUAG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V79_171 not in the Motif Atlas
Homologous match to IL_7RQB_115
Geometric discrepancy: 0.1259
The information below is about IL_7RQB_115
Detailed Annotation
Bacterial 5S Loop E
Broad Annotation
Loop E
Motif group
IL_56455.3
Basepair signature
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V79|1|BB|C|71
4V79|1|BB|G|72
4V79|1|BB|A|73
4V79|1|BB|U|74
4V79|1|BB|G|75
4V79|1|BB|G|76
4V79|1|BB|U|77
4V79|1|BB|A|78
4V79|1|BB|G|79
*
4V79|1|BB|C|97
4V79|1|BB|G|98
4V79|1|BB|A|99
4V79|1|BB|G|100
4V79|1|BB|A|101
4V79|1|BB|G|102
4V79|1|BB|U|103
4V79|1|BB|A|104
4V79|1|BB|G|105

Current chains

Chain BB
5S ribosomal RNA

Nearby chains

Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BM
50S ribosomal protein L16
Chain BV
50S ribosomal protein L25

Coloring options:


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