IL_4V7B_074

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7B_074 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.055

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V7B|1|BA|G|188
4V7B|1|BA|G|189
4V7B|1|BA|A|190
4V7B|1|BA|A|191
4V7B|1|BA|C|192
4V7B|1|BA|U|193
4V7B|1|BA|G|194
*
4V7B|1|BA|C|201
4V7B|1|BA|U|202
4V7B|1|BA|A|203
4V7B|1|BA|A|204
4V7B|1|BA|G|205
4V7B|1|BA|U|206
4V7B|1|BA|A|207
4V7B|1|BA|C|208

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BL

50S ribosomal protein L15

Chain BX

50S ribosomal protein L28