IL_4V7B_106

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

4V7B|1|BA|A|1127, 4V7B|1|BA|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7B_106 not in the Motif Atlas

Geometric match to IL_5J7L_281

Geometric discrepancy: 0.0641

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

4V7B|1|BA|G|1024
4V7B|1|BA|G|1025
4V7B|1|BA|G|1026
4V7B|1|BA|A|1027
4V7B|1|BA|A|1028
4V7B|1|BA|A|1029
4V7B|1|BA|C|1030
*
4V7B|1|BA|G|1124
4V7B|1|BA|G|1125
4V7B|1|BA|A|1126
4V7B|1|BA|A|1127
4V7B|1|BA|G|1128
4V7B|1|BA|A|1129
4V7B|1|BA|U|1130
4V7B|1|BA|G|1131
4V7B|1|BA|U|1132
4V7B|1|BA|A|1133
4V7B|1|BA|A|1134
4V7B|1|BA|C|1135
4V7B|1|BA|G|1136
4V7B|1|BA|G|1137
4V7B|1|BA|G|1138
4V7B|1|BA|G|1139
4V7B|1|BA|C|1140

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13

Chain BM

50S ribosomal protein L16