IL_4V7B_179

3D structure

PDB id

4V7B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Visualization of two tRNAs trapped in transit during EF-G-mediated translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

6.8 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7B_179 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.0737

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V7B|1|BA|U|2847
4V7B|1|BA|G|2848
4V7B|1|BA|U|2849
4V7B|1|BA|A|2850
4V7B|1|BA|A|2851
4V7B|1|BA|G|2852
*
4V7B|1|BA|U|2865
4V7B|1|BA|U|2866
4V7B|1|BA|G|2867
4V7B|1|BA|A|2868
4V7B|1|BA|G|2869

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L17

Chain BP

50S ribosomal protein L19