IL_4V7C_021

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7C_021 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1847

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V7C|1|AA|U|409
4V7C|1|AA|G|410
4V7C|1|AA|A|411
4V7C|1|AA|A|412
4V7C|1|AA|G|413
4V7C|1|AA|A|414
4V7C|1|AA|A|415
4V7C|1|AA|G|416
*
4V7C|1|AA|U|427
4V7C|1|AA|G|428
4V7C|1|AA|U|429
4V7C|1|AA|A|430
4V7C|1|AA|A|431
4V7C|1|AA|A|432
4V7C|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4