IL_4V7C_120

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7C_120 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.1075

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V7C|1|BA|A|1262
4V7C|1|BA|U|1263
4V7C|1|BA|A|1264
4V7C|1|BA|A|1265
4V7C|1|BA|G|1266
4V7C|1|BA|U|1267
4V7C|1|BA|A|1268
4V7C|1|BA|A|1269
*
4V7C|1|BA|U|2011
4V7C|1|BA|G|2012
4V7C|1|BA|A|2013
4V7C|1|BA|A|2014
4V7C|1|BA|A|2015
4V7C|1|BA|U|2016
4V7C|1|BA|U|2017

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain BF

50S ribosomal protein L4

Chain BU

50S ribosomal protein L22