IL_4V7C_159

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GAA*UACUC

Length

8 nucleotides

Bulged bases

4V7C|1|BA|A|2439

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7C_159 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.2454

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7C|1|BA|G|2069
4V7C|1|BA|A|2070
4V7C|1|BA|A|2071
*
4V7C|1|BA|U|2438
4V7C|1|BA|A|2439
4V7C|1|BA|C|2440
4V7C|1|BA|U|2441
4V7C|1|BA|C|2442

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2

Chain BF

50S ribosomal protein L4