IL_4V7C_166

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GAUGUGUAGGAUAGG*CCCUUU

Length

21 nucleotides

Bulged bases

4V7C|1|BA|U|2111, 4V7C|1|BA|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7C_166 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3701

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V7C|1|BA|G|2107
4V7C|1|BA|A|2108
4V7C|1|BA|U|2109
4V7C|1|BA|G|2110
4V7C|1|BA|U|2111
4V7C|1|BA|G|2112
4V7C|1|BA|U|2113
4V7C|1|BA|A|2114
4V7C|1|BA|G|2115
4V7C|1|BA|G|2116
4V7C|1|BA|A|2117
4V7C|1|BA|U|2118
4V7C|1|BA|A|2119
4V7C|1|BA|G|2120
4V7C|1|BA|G|2121
*
4V7C|1|BA|C|2177
4V7C|1|BA|C|2178
4V7C|1|BA|C|2179
4V7C|1|BA|U|2180
4V7C|1|BA|U|2181
4V7C|1|BA|U|2182

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AW

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L1