IL_4V7C_213

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GUAGAG*UGGAC

Length

11 nucleotides

Bulged bases

4V7C|1|AA|A|665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7C_213 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3589

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V7C|1|AA|G|661
4V7C|1|AA|U|662
4V7C|1|AA|A|663
4V7C|1|AA|G|664
4V7C|1|AA|A|665
4V7C|1|AA|G|666
*
4V7C|1|AA|U|740
4V7C|1|AA|G|741
4V7C|1|AA|G|742
4V7C|1|AA|A|743
4V7C|1|AA|C|744

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S ribosomal protein S6

Chain AO

30S ribosomal protein S15

Chain AR

30S ribosomal protein S18