IL_4V7D_005

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GUAAG*CGUUAUAAC

Length

14 nucleotides

Bulged bases

4V7D|1|AA|U|102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_005 not in the Motif Atlas

Homologous match to IL_5J7L_248

Geometric discrepancy: 0.1682

The information below is about IL_5J7L_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37015.1

Basepair signature

cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V7D|1|AA|G|81
4V7D|1|AA|U|82
4V7D|1|AA|A|83
4V7D|1|AA|A|84
4V7D|1|AA|G|85
*
4V7D|1|AA|C|97
4V7D|1|AA|G|98
4V7D|1|AA|U|99
4V7D|1|AA|U|100
4V7D|1|AA|A|101
4V7D|1|AA|U|102
4V7D|1|AA|A|103
4V7D|1|AA|A|104
4V7D|1|AA|C|105

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L29

Chain AX

50S ribosomal protein L24