IL_4V7D_007

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_007 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.1194

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V7D|1|AA|G|188
4V7D|1|AA|G|189
4V7D|1|AA|A|190
4V7D|1|AA|A|191
4V7D|1|AA|C|192
4V7D|1|AA|U|193
4V7D|1|AA|G|194
*
4V7D|1|AA|C|201
4V7D|1|AA|U|202
4V7D|1|AA|A|203
4V7D|1|AA|A|204
4V7D|1|AA|G|205
4V7D|1|AA|U|206
4V7D|1|AA|A|207
4V7D|1|AA|C|208

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AO

50S ribosomal protein L15