IL_4V7D_013

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V7D|1|AA|A|504, 4V7D|1|AA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_013 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0965

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V7D|1|AA|G|481
4V7D|1|AA|A|482
4V7D|1|AA|A|483
4V7D|1|AA|C|484
*
4V7D|1|AA|G|496
4V7D|1|AA|A|497
4V7D|1|AA|G|498
4V7D|1|AA|U|499
4V7D|1|AA|G|500
4V7D|1|AA|A|501
4V7D|1|AA|A|502
4V7D|1|AA|A|503
4V7D|1|AA|A|504
4V7D|1|AA|A|505
4V7D|1|AA|G|506
4V7D|1|AA|A|507
4V7D|1|AA|A|508
4V7D|1|AA|C|509

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AV

50S ribosomal protein L22

Chain AX

50S ribosomal protein L24