3D structure

PDB id
4V7D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.6 Å

Loop

Sequence
CGC*GUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7D_080 not in the Motif Atlas
Geometric match to IL_5ED2_004
Geometric discrepancy: 0.1695
The information below is about IL_5ED2_004
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

4V7D|1|AA|C|2045
4V7D|1|AA|G|2046
4V7D|1|AA|C|2047
*
4V7D|1|AA|G|2621
4V7D|1|AA|U|2622
4V7D|1|AA|G|2623

Current chains

Chain AA
23S ribosomal RNA

Nearby chains

Chain A4
50S ribosomal protein L32
Chain AE
50S ribosomal protein L3

Coloring options:


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