IL_4V7D_080

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CGC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_080 not in the Motif Atlas

Geometric match to IL_5ED2_004

Geometric discrepancy: 0.1695

The information below is about IL_5ED2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V7D|1|AA|C|2045
4V7D|1|AA|G|2046
4V7D|1|AA|C|2047
*
4V7D|1|AA|G|2621
4V7D|1|AA|U|2622
4V7D|1|AA|G|2623

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L32

Chain AE

50S ribosomal protein L3