IL_4V7D_085

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GAA*UACUC

Length

8 nucleotides

Bulged bases

4V7D|1|AA|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_085 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3988

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

4V7D|1|AA|G|2069
4V7D|1|AA|A|2070
4V7D|1|AA|A|2071
*
4V7D|1|AA|U|2438
4V7D|1|AA|A|2439
4V7D|1|AA|C|2440
4V7D|1|AA|U|2441
4V7D|1|AA|C|2442

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain AF

50S ribosomal protein L4

Chain BV

Transfer RNA; tRNA