IL_4V7D_087

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4V7D|1|AA|G|2238

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_087 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.1315

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V7D|1|AA|U|2081
4V7D|1|AA|A|2082
4V7D|1|AA|G|2083
*
4V7D|1|AA|U|2236
4V7D|1|AA|G|2237
4V7D|1|AA|G|2238
4V7D|1|AA|G|2239

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AD

50S ribosomal protein L2

Chain BW

Transfer RNA; tRNA