IL_4V7D_089

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

UGAG*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_089 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2438

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V7D|1|AA|U|2099
4V7D|1|AA|G|2100
4V7D|1|AA|A|2101
4V7D|1|AA|G|2102
*
4V7D|1|AA|U|2187
4V7D|1|AA|U|2188
4V7D|1|AA|U|2189
4V7D|1|AA|G|2190

Current chains

Chain AA

23S ribosomal RNA

Nearby chains