IL_4V7D_138

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GGAAA*UGCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_138 not in the Motif Atlas

Geometric match to IL_4WF9_109

Geometric discrepancy: 0.3993

The information below is about IL_4WF9_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V7D|1|BA|G|127
4V7D|1|BA|G|128
4V7D|1|BA|A|129
4V7D|1|BA|A|130
4V7D|1|BA|A|131
*
4V7D|1|BA|U|231
4V7D|1|BA|G|232
4V7D|1|BA|C|233
4V7D|1|BA|C|234

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BQ

30S ribosomal protein S17

Chain BT

30S ribosomal protein S20